MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.2 nTPM
HPA Brain:85.0 nTPM
GTEx:106.2 nTPM
FANTOM5:180.2 Scaled Tags Per Million
Pig:89.7 nTPM
Mouse:187.2 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.5
1827 Male, age 72, unknown 84.2
2411 Female, age 72, unknown 84.0
2019 Male, age 18, unknown 77.4
1870 Female, age 42, unknown 73.4
1833 Male, age 53, unknown 69.4
2828 Female, age 72, unknown 65.6
2666 Male, age 74, left hemisphere 64.7
1830 Male, age 51, unknown 62.7
2586 Male, age 75, left hemisphere 58.3
2219 Male, age 76, both hemispheres 55.0
Dorsal raphe nucleus
nTPM: 79.0
2298 Female, age 72, unknown 89.8
2047 Male, age 72, unknown 84.0
1828 Male, age 53, unknown 77.0
2750 Male, age 76, both hemispheres 74.0
2016 Female, age 72, unknown 70.2
Inferior colliculus
nTPM: 70.0
2097 Female, age 72, unknown 82.9
1890 Male, age 53, unknown 70.1
1848 Female, age 42, unknown 68.5
2849 Male, age 72, unknown 58.6
Median raphe nucleus
nTPM: 81.5
2220 Male, age 76, midline 81.5
Periaquaductal grey, anterior
nTPM: 72.9
1947 Male, age 18, unknown 84.3
1795 Male, age 51, unknown 72.8
2502 Female, age 75, unknown 61.6
Periaquaductal grey, dorsal
nTPM: 74.0
2850 Male, age 76, both hemispheres 78.4
1831 Male, age 72, unknown 75.2
1840 Male, age 53, unknown 74.0
2464 Female, age 72, unknown 68.6
Periaquaductal grey, lateral
nTPM: 70.9
2272 Male, age 74, both hemispheres 74.2
2140 Male, age 76, both hemispheres 70.7
2053 Male, age 18, unknown 67.9
Pretectal area
nTPM: 82.5
1816 Male, age 51, unknown 98.8
1944 Female, age 72, unknown 98.6
2007 Male, age 72, unknown 95.7
1817 Female, age 42, unknown 92.5
1815 Male, age 53, unknown 88.6
2273 Male, age 74, both hemispheres 80.4
2667 Female, age 75, unknown 79.9
2224 Female, age 72, unknown 76.9
2316 Male, age 76, right hemisphere 66.8
2825 Male, age 18, unknown 66.1
2407 Male, age 75, both hemispheres 63.4
Red nucleus
nTPM: 66.6
1821 Female, age 72, unknown 83.2
2725 Female, age 75, unknown 81.4
1954 Female, age 42, unknown 72.0
2785 Male, age 18, unknown 68.6
2823 Male, age 76, right hemisphere 67.1
1904 Male, age 53, unknown 65.0
1865 Male, age 51, unknown 63.9
2584 Male, age 75, left hemisphere 63.8
2503 Female, age 72, unknown 60.8
2227 Male, age 72, unknown 59.2
2769 Male, age 72, unknown 58.1
2588 Male, age 74, left hemisphere 56.0
Substantia nigra
nTPM: 85.0
1916 Female, age 42, unknown 103.0
1889 Female, age 72, unknown 94.1
2409 Female, age 72, unknown 92.8
1851 Male, age 51, unknown 88.2
2241 Male, age 72, unknown 86.7
1941 Male, age 53, unknown 86.0
2665 Male, age 74, both hemispheres 76.5
2583 Male, age 75, right hemisphere 75.4
2590 Female, age 75, unknown 75.3
2699 Male, age 18, unknown 72.2
Superior colliculus
nTPM: 70.5
2087 Female, age 72, unknown 80.7
2261 Male, age 18, unknown 77.7
2668 Female, age 75, unknown 76.6
2587 Male, age 74, left hemisphere 74.8
1796 Male, age 53, unknown 71.2
1895 Male, age 76, right hemisphere 68.3
1913 Female, age 42, unknown 66.4
1995 Male, age 72, unknown 66.1
1839 Male, age 51, unknown 65.1
2664 Male, age 75, both hemispheres 57.8
Ventral tegmental area
nTPM: 76.9
2410 Female, age 72, unknown 94.9
1915 Female, age 42, unknown 83.0
2218 Male, age 76, both hemispheres 77.4
1942 Male, age 51, unknown 73.3
2021 Male, age 53, unknown 69.4
2223 Female, age 72, unknown 63.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 106.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.2
Samples: 139

Max nTPM: 174.8
Min nTPM: 67.5
Std nTPM: 20.7
Median nTPM: 103.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 174.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 167.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 165.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 157.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 153.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 152.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 151.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 146.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 143.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 143.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 142.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 180.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.2
FF:10158-103A5 76 years, female 180.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 89.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.9
Samples: 4

Max nTPM: 100.6
Min nTPM: 58.6
Sample A Female 100.6
Sample B Female 74.2
Sample C Male 86.1
Sample D Male 58.6
Midbrain
nTPM: 89.7
Samples: 4

Max nTPM: 106.1
Min nTPM: 78.8
Sample A Female 85.7
Sample B Female 78.8
Sample C Male 106.1
Sample D Male 88.3
Periaqueductal gray
nTPM: 68.8
Samples: 3

Max nTPM: 76.7
Min nTPM: 61.8
Sample B Female 67.9
Sample C Male 76.7
Sample D Male 61.8
Superior colliculi
nTPM: 89.4
Samples: 4

Max nTPM: 100.6
Min nTPM: 75.6
Sample A Female 99.6
Sample B Female 75.6
Sample C Male 100.6
Sample D Male 81.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 187.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 187.2
Samples: 4

Max nTPM: 191.9
Min nTPM: 182.6
Sample A Male 182.6
Sample B Male 191.9
Sample C Female 189.4
Sample D Female 184.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
68191486 Antisense, RP_041129_01_C07, Mouse strain C57BL/6J (56 days, male) 4.3
878 Antisense, RP_Baylor_102991, Mouse strain C57BL/6J (56 days, male) 0.9

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