HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:93.6 nTPM
HPA Brain:82.9 nTPM
GTEx:93.6 nTPM
FANTOM5:256.0 Scaled Tags Per Million
Pig:89.4 nTPM
Mouse:182.8 nTPM
Allen mouse:5.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA056141Antibody CAB005331
Glial cells Not detectedHigh
Neuronal cells LowHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 82.9
Sample id Sample description nTPM
Hippocampus
nTPM: 68.0
1898 Male, age 80, left hemisphere 88.7
1855 Male, age 76, left hemisphere 77.0
2529 Female, age 94, left hemisphere 64.3
2621 Female, age 67, right hemisphere 60.6
1911 Female, age 85, right hemisphere 60.1
2148 Female, age 91, left hemisphere 57.2
Dentate gyrus
nTPM: 67.0
2010 Male, age 76, both hemispheres 85.3
1927 Female, age 91, both hemispheres 81.9
2528 Male, age 74, both hemispheres 72.6
2246 Female, age 85, both hemispheres 62.2
2530 Female, age 94, left hemisphere 56.0
2531 Female, age 67, both hemispheres 44.3
Entorhinal gyrus
nTPM: 63.9
1938 Female, age 85, left hemisphere 80.0
1787 Male, age 76, left hemisphere 68.6
2764 Male, age 80, right hemisphere 65.4
2117 Female, age 91, right hemisphere 59.6
2613 Female, age 94, left hemisphere 59.4
2686 Male, age 75, right hemisphere 50.7
Hippocampus, CA1
nTPM: 74.0
2749 Male, age 80, left hemisphere 91.7
1873 Female, age 85, both hemispheres 82.0
2045 Male, age 76, both hemispheres 74.7
2527 Male, age 74, both hemispheres 65.4
2082 Female, age 91, right hemisphere 56.0
Hippocampus, CA2
nTPM: 70.5
1963 Male, age 80, left hemisphere 82.9
1892 Male, age 76, both hemispheres 81.8
2249 Male, age 74, both hemispheres 74.9
1940 Female, age 85, left hemisphere 68.9
2113 Female, age 91, right hemisphere 58.1
2437 Female, age 94, left hemisphere 56.5
Hippocampus, CA3
nTPM: 68.2
2436 Male, age 74, both hemispheres 87.5
1867 Male, age 76, both hemispheres 79.1
2137 Male, age 80, left hemisphere 75.8
1891 Female, age 85, both hemispheres 66.9
2620 Female, age 94, left hemisphere 54.8
2861 Female, age 67, both hemispheres 45.1
Parahippocampal cortex
nTPM: 69.7
1850 Male, age 80, both hemispheres 88.8
1933 Female, age 85, both hemispheres 82.7
2018 Male, age 76, both hemispheres 76.4
1990 Female, age 91, right hemisphere 73.2
2250 Female, age 67, right hemisphere 72.7
2693 Female, age 94, both hemispheres 69.5
2532 Female, age 72, left hemisphere 62.3
2245 Female, age 91, both hemispheres 61.5
2692 Male, age 74, both hemispheres 58.2
2622 Female, age 67, right hemisphere 51.6
Perirhinal gyrus
nTPM: 82.9
1847 Female, age 91, left hemisphere 94.3
1841 Female, age 85, right hemisphere 91.1
1794 Male, age 80, right hemisphere 83.7
2521 Female, age 94, right hemisphere 78.7
2848 Male, age 76, right hemisphere 66.5
Subiculum
nTPM: 64.3
2042 Male, age 76, both hemispheres 72.0
1977 Female, age 85, both hemispheres 70.5
1901 Male, age 80, both hemispheres 66.9
2729 Female, age 91, right hemisphere 64.7
2619 Male, age 74, both hemispheres 57.1
2438 Female, age 94, left hemisphere 54.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 93.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 93.6
Samples: 197

Max nTPM: 179.5
Min nTPM: 55.2
Std nTPM: 22.7
Median nTPM: 90.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 179.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 168.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 155.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 153.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 151.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 150.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 147.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 142.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 135.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 132.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 132.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 256.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 256.0
FF:10169-103B7 60 years, female 279.3
FF:10153-102I9 76 years, female 232.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 89.4
Pig sample Sample description nTPM
Subiculum
nTPM: 84.8
Samples: 4

Max nTPM: 103.5
Min nTPM: 76.1
Sample A Female 103.5
Sample B Female 77.4
Sample C Male 76.1
Sample D Male 82.2
Dorsal hippocampus
nTPM: 81.0
Samples: 4

Max nTPM: 96.9
Min nTPM: 68.9
Sample A Female 96.9
Sample B Female 80.4
Sample C Male 77.9
Sample D Male 68.9
Entorhinal cortex
nTPM: 89.4
Samples: 4

Max nTPM: 104.4
Min nTPM: 75.7
Sample A Female 86.7
Sample B Female 104.4
Sample C Male 90.9
Sample D Male 75.7
Ventral hippocampus
nTPM: 70.9
Samples: 4

Max nTPM: 81.2
Min nTPM: 64.4
Sample A Female 81.2
Sample B Female 64.4
Sample C Male 67.6
Sample D Male 70.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 182.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 182.8
Samples: 4

Max nTPM: 189.9
Min nTPM: 174.7
Sample A Male 174.7
Sample B Male 189.9
Sample C Female 183.8
Sample D Female 182.9
Hippocampal formation
nTPM: 176.7
Samples: 4

Max nTPM: 193.7
Min nTPM: 166.2
Sample A Male 193.7
Sample B Male 169.7
Sample C Female 177.1
Sample D Female 166.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.2
68191486 Antisense, RP_041129_01_C07, Mouse strain C57BL/6J (56 days, male) 8.6
878 Antisense, RP_Baylor_102991, Mouse strain C57BL/6J (56 days, male) 1.8

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