HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:16.4 nTPM
GTEx:26.2 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Pig:23.6 nTPM
Mouse:62.0 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells05101520nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA014845
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 16.4
Sample id Sample description nTPM
Hippocampus
nTPM: 15.8
1898 Male, age 80, left hemisphere 19.1
2529 Female, age 94, left hemisphere 17.4
1911 Female, age 85, right hemisphere 16.0
1855 Male, age 76, left hemisphere 15.7
2621 Female, age 67, right hemisphere 14.7
2148 Female, age 91, left hemisphere 12.0
Dentate gyrus
nTPM: 13.3
2528 Male, age 74, both hemispheres 15.3
1927 Female, age 91, both hemispheres 15.2
2530 Female, age 94, left hemisphere 14.0
2010 Male, age 76, both hemispheres 13.5
2246 Female, age 85, both hemispheres 12.8
2531 Female, age 67, both hemispheres 9.2
Entorhinal gyrus
nTPM: 15.2
1938 Female, age 85, left hemisphere 18.6
2117 Female, age 91, right hemisphere 16.2
2686 Male, age 75, right hemisphere 16.1
2764 Male, age 80, right hemisphere 14.8
1787 Male, age 76, left hemisphere 13.7
2613 Female, age 94, left hemisphere 11.9
Hippocampus, CA1
nTPM: 14.6
2749 Male, age 80, left hemisphere 16.7
1873 Female, age 85, both hemispheres 14.9
2082 Female, age 91, right hemisphere 14.4
2527 Male, age 74, both hemispheres 14.4
2045 Male, age 76, both hemispheres 12.5
Hippocampus, CA2
nTPM: 16.4
1892 Male, age 76, both hemispheres 18.3
2249 Male, age 74, both hemispheres 17.1
2437 Female, age 94, left hemisphere 16.2
1963 Male, age 80, left hemisphere 16.0
1940 Female, age 85, left hemisphere 15.8
2113 Female, age 91, right hemisphere 15.1
Hippocampus, CA3
nTPM: 16.1
2436 Male, age 74, both hemispheres 21.0
1891 Female, age 85, both hemispheres 17.9
1867 Male, age 76, both hemispheres 17.8
2620 Female, age 94, left hemisphere 14.7
2137 Male, age 80, left hemisphere 13.0
2861 Female, age 67, both hemispheres 12.0
Parahippocampal cortex
nTPM: 14.6
2692 Male, age 74, both hemispheres 16.6
1850 Male, age 80, both hemispheres 16.2
1933 Female, age 85, both hemispheres 15.8
1990 Female, age 91, right hemisphere 15.5
2622 Female, age 67, right hemisphere 15.5
2250 Female, age 67, right hemisphere 14.4
2532 Female, age 72, left hemisphere 14.3
2693 Female, age 94, both hemispheres 13.4
2245 Female, age 91, both hemispheres 13.0
2018 Male, age 76, both hemispheres 11.7
Perirhinal gyrus
nTPM: 14.1
1847 Female, age 91, left hemisphere 15.5
1794 Male, age 80, right hemisphere 14.8
1841 Female, age 85, right hemisphere 14.4
2521 Female, age 94, right hemisphere 13.1
2848 Male, age 76, right hemisphere 12.8
Subiculum
nTPM: 15.6
1901 Male, age 80, both hemispheres 17.2
2042 Male, age 76, both hemispheres 16.8
2619 Male, age 74, both hemispheres 16.1
1977 Female, age 85, both hemispheres 15.3
2438 Female, age 94, left hemisphere 14.2
2729 Female, age 91, right hemisphere 14.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 26.2
GTEx sample id Sample description nTPM
23.625.928.417.635.405101520253035
Brain - Hippocampus
Average nTPM: 26.2
Samples: 255

Max nTPM: 39.4
Min nTPM: 17.6
Std nTPM: 4.0
Median nTPM: 25.9
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 39.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 39.0
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 38.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 38.5
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 38.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 36.9
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 36.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 36.4
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 35.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 33.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 33.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.7
FF:10153-102I9 76 years, female 22.7
FF:10169-103B7 60 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 23.6
Pig sample Sample description nTPM
15.115.316.914.715.402468101214161820
 		Subiculum
nTPM: 16.6
Samples: 4

Max nTPM: 21.2
Min nTPM: 14.7
Sample A Female 21.2
Sample B Female 14.7
Sample C Male 15.2
Sample D Male 15.4
Dorsal hippocampus
nTPM: 23.6
Samples: 4

Max nTPM: 32.5
Min nTPM: 17.8
Sample A Female 32.5
Sample B Female 23.4
Sample C Male 20.7
Sample D Male 17.8
16.317.619.116.219.9024681012141618
 		Entorhinal cortex
nTPM: 17.8
Samples: 4

Max nTPM: 19.9
Min nTPM: 16.2
Sample A Female 18.9
Sample B Female 19.9
Sample C Male 16.3
Sample D Male 16.2
18.822.123.712.624.2024681012141618202224
 		Ventral hippocampus
nTPM: 20.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 12.6
Sample A Female 24.2
Sample B Female 12.6
Sample C Male 23.5
Sample D Male 20.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 62.0
Mouse sample Sample description nTPM
57.859.260.755.263.9051015202530354045505560
 		Entorhinal cortex
nTPM: 59.4
Samples: 4

Max nTPM: 63.9
Min nTPM: 55.2
Sample A Male 58.7
Sample B Male 59.6
Sample C Female 63.9
Sample D Female 55.2
56.562.668.154.268.605101520253035404550556065
 		Hippocampal formation
nTPM: 62.0
Samples: 4

Max nTPM: 68.6
Min nTPM: 54.2
Sample A Male 67.9
Sample B Male 57.3
Sample C Female 54.2
Sample D Female 68.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.9
68637665 Antisense, RP_050126_01_D03, Mouse strain C57BL/6J (56 days, male) 4.9

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