BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:30.7 nTPM
HPA Brain:21.1 nTPM
GTEx:30.7 nTPM
FANTOM5:41.1 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:70.1 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells05101520nCPM

CAUDATE - Antibody stainingi
Antibody HPA014845
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 21.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.5
2481 Female, age 94, left hemisphere 20.4
2846 Female, age 79, unknown 18.9
1854 Male, age 80, left hemisphere 17.7
2290 Female, age 72, unknown 16.8
1781 Male, age 74, unknown 15.7
2288 Male, age 75, left hemisphere 14.8
1857 Female, age 85, left hemisphere 14.1
2289 Male, age 61, right hemisphere 14.0
Globus pallidus, externus
nTPM: 21.1
2772 Female, age 79, unknown 24.6
2395 Male, age 75, both hemispheres 21.4
1996 Male, age 80, right hemisphere 20.4
2567 Female, age 72, unknown 20.1
2646 Male, age 61, right hemisphere 18.7
Globus pallidus, internus
nTPM: 21.1
1818 Male, age 74, unknown 23.0
2778 Female, age 91, both hemispheres 22.7
2287 Male, age 75, right hemisphere 22.6
2037 Male, age 80, right hemisphere 21.5
2111 Female, age 85, right hemisphere 21.0
2483 Female, age 94, right hemisphere 20.5
2566 Female, age 72, unknown 16.6
Nucleus accumbens
nTPM: 16.1
2286 Male, age 75, left hemisphere 19.4
1806 Female, age 85, left hemisphere 17.1
1856 Female, age 91, right hemisphere 17.0
1783 Male, age 74, unknown 16.6
2698 Female, age 72, unknown 16.1
2391 Female, age 94, left hemisphere 14.5
2732 Male, age 80, right hemisphere 14.3
2824 Male, age 61, right hemisphere 13.7
Nucleus basalis of Meynert
nTPM: 17.0
2569 Male, age 61, both hemispheres 21.2
2393 Male, age 80, right hemisphere 16.5
2821 Male, age 75, both hemispheres 15.8
2484 Female, age 94, left hemisphere 14.5
Nucleus of the diagonal band
nTPM: 13.9
1812 Female, age 91, both hemispheres 17.5
2775 Male, age 80, right hemisphere 15.2
2029 Male, age 61, right hemisphere 12.6
2195 Female, age 85, both hemispheres 12.4
1979 Male, age 74, unknown 11.6
Putamen
nTPM: 15.9
1937 Female, age 91, right hemisphere 16.8
1838 Male, age 80, right hemisphere 16.3
2466 Female, age 79, unknown 16.2
2482 Female, age 94, left hemisphere 16.0
2647 Male, age 75, left hemisphere 15.7
1829 Male, age 74, unknown 15.6
2489 Female, age 72, unknown 14.9
Septal nuclei
nTPM: 14.3
2394 Male, age 61, left hemisphere 17.9
2199 Male, age 80, right hemisphere 14.8
1960 Male, age 74, unknown 14.3
2059 Female, age 85, both hemispheres 14.3
2009 Female, age 91, both hemispheres 13.5
2031 Female, age 72, unknown 12.8
2629 Female, age 94, right hemisphere 12.4
Stria terminalis, bed nucleus
nTPM: 12.1
1974 Female, age 91, both hemispheres 12.6
2486 Female, age 94, both hemispheres 11.8
2201 Male, age 74, unknown 11.7

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 30.7
GTEx sample id Sample description nTPM
23.626.930.913.941.8051015202530354045
Brain - Caudate (basal ganglia)
Average nTPM: 27.8
Samples: 300

Max nTPM: 47.0
Min nTPM: 13.9
Std nTPM: 5.7
Median nTPM: 26.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 47.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 45.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 45.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 42.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 42.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 41.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 40.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 40.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 40.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 39.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 39.7
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21.624.629.114.040.0051015202530354045
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.4
Samples: 285

Max nTPM: 46.6
Min nTPM: 14.0
Std nTPM: 5.3
Median nTPM: 24.6
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 46.6
GTEX-11UD1-0011-R6b-SM-GI4WJ 40-49 years, female 42.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 41.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 41.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 41.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 40.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 40.0
GTEX-11EMC-0011-R6b-SM-GIN8N 60-69 years, female 37.4
GTEX-1JMQJ-0011-R6b-SM-F3417 50-59 years, male 36.8
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 36.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 36.3
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26.430.334.216.945.805101520253035404550
Brain - Putamen (basal ganglia)
Average nTPM: 30.7
Samples: 254

Max nTPM: 54.1
Min nTPM: 16.9
Std nTPM: 5.9
Median nTPM: 30.2
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 54.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 53.1
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 50.2
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 47.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 46.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 45.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 44.9
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 44.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 44.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 43.2
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 42.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.7
FF:10164-103B2 76 years, female 24.7
Nucleus accumbens
Scaled Tags Per Million: 41.1
FF:10037-101F1 23-56 years, mixed 41.1
Putamen
Scaled Tags Per Million: 22.8
FF:10176-103C5 60 years, female 22.8
Globus pallidus
Scaled Tags Per Million: 33.3
FF:10175-103C4 60 years, female 36.8
FF:10161-103A8 76 years, female 29.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 22.4
Pig sample Sample description nTPM
17.018.219.915.023.60246810121416182022
 		Caudate
nTPM: 18.8
Samples: 4

Max nTPM: 23.6
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 18.7
Sample C Male 23.6
Sample D Male 17.7
Putamen
nTPM: 22.4
Samples: 4

Max nTPM: 31.7
Min nTPM: 17.9
Sample A Female 18.6
Sample B Female 17.9
Sample C Male 31.7
Sample D Male 21.5
16.317.318.415.719.4024681012141618
 		Septum
nTPM: 17.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 15.7
Sample A Female 15.7
Sample B Female 16.5
Sample C Male 19.4
Sample D Male 18.0
14.417.019.814.420.202468101214161820
 		Ventral pallidum
nTPM: 17.2
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 19.6
Sample C Male 20.2
Sample D Male 14.4

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 70.1
Mouse sample Sample description nTPM
59.361.264.359.068.005101520253035404550556065
 		Caudate putamen
nTPM: 62.4
Samples: 4

Max nTPM: 68.0
Min nTPM: 59.0
Sample A Male 63.0
Sample B Male 59.4
Sample C Female 59.0
Sample D Female 68.0
64.467.773.463.481.801020304050607080
 		Septum
nTPM: 70.1
Samples: 4

Max nTPM: 81.8
Min nTPM: 63.4
Sample A Male 63.4
Sample B Male 81.8
Sample C Female 70.6
Sample D Female 64.7
67.869.170.464.673.8010203040506070
 		Ventral forebrain
nTPM: 69.2
Samples: 4

Max nTPM: 73.8
Min nTPM: 64.6
Sample A Male 64.6
Sample B Male 69.3
Sample C Female 73.8
Sample D Female 68.9

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
68637665 Antisense, RP_050126_01_D03, Mouse strain C57BL/6J (56 days, male) 2.6
Pallidum
Expression energy: 2.9
68637665 Antisense, RP_050126_01_D03, Mouse strain C57BL/6J (56 days, male) 2.9

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