MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.4 nTPM
HPA Brain:17.0 nTPM
GTEx:7.4 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:2.2 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells05101520253035nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1870 Female, age 42, unknown 14.7
1833 Male, age 53, unknown 13.8
2019 Male, age 18, unknown 13.6
2411 Female, age 72, unknown 13.1
2219 Male, age 76, both hemispheres 12.5
2828 Female, age 72, unknown 12.2
1827 Male, age 72, unknown 11.8
1830 Male, age 51, unknown 11.6
2666 Male, age 74, left hemisphere 8.0
2586 Male, age 75, left hemisphere 6.6
Dorsal raphe nucleus
nTPM: 14.2
2750 Male, age 76, both hemispheres 15.0
2016 Female, age 72, unknown 14.8
2298 Female, age 72, unknown 14.5
1828 Male, age 53, unknown 13.9
2047 Male, age 72, unknown 12.9
Inferior colliculus
nTPM: 11.6
2849 Male, age 72, unknown 12.4
1890 Male, age 53, unknown 12.2
1848 Female, age 42, unknown 11.7
2097 Female, age 72, unknown 10.0
Median raphe nucleus
nTPM: 11.9
2220 Male, age 76, midline 11.9
Periaquaductal grey, anterior
nTPM: 13.1
1947 Male, age 18, unknown 14.4
1795 Male, age 51, unknown 13.0
2502 Female, age 75, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 14.9
2850 Male, age 76, both hemispheres 19.7
1840 Male, age 53, unknown 15.0
1831 Male, age 72, unknown 13.0
2464 Female, age 72, unknown 12.2
Periaquaductal grey, lateral
nTPM: 17.0
2272 Male, age 74, both hemispheres 20.7
2140 Male, age 76, both hemispheres 17.6
2053 Male, age 18, unknown 12.8
Pretectal area
nTPM: 13.3
2273 Male, age 74, both hemispheres 24.0
2224 Female, age 72, unknown 16.0
2316 Male, age 76, right hemisphere 13.1
2667 Female, age 75, unknown 13.1
2825 Male, age 18, unknown 12.8
1815 Male, age 53, unknown 12.4
2407 Male, age 75, both hemispheres 11.6
1816 Male, age 51, unknown 11.4
1944 Female, age 72, unknown 11.0
1817 Female, age 42, unknown 10.8
2007 Male, age 72, unknown 9.7
Red nucleus
nTPM: 13.8
1954 Female, age 42, unknown 16.6
2785 Male, age 18, unknown 15.2
1865 Male, age 51, unknown 15.0
2769 Male, age 72, unknown 14.8
2227 Male, age 72, unknown 14.5
2823 Male, age 76, right hemisphere 14.3
2725 Female, age 75, unknown 14.2
1821 Female, age 72, unknown 14.1
2503 Female, age 72, unknown 13.1
1904 Male, age 53, unknown 13.0
2584 Male, age 75, left hemisphere 11.2
2588 Male, age 74, left hemisphere 9.2
Substantia nigra
nTPM: 12.8
2409 Female, age 72, unknown 15.2
2590 Female, age 75, unknown 15.0
1851 Male, age 51, unknown 14.4
2241 Male, age 72, unknown 13.4
2583 Male, age 75, right hemisphere 12.9
1916 Female, age 42, unknown 12.8
1941 Male, age 53, unknown 12.4
2699 Male, age 18, unknown 12.0
1889 Female, age 72, unknown 11.1
2665 Male, age 74, both hemispheres 8.9
Superior colliculus
nTPM: 12.6
2587 Male, age 74, left hemisphere 15.7
1995 Male, age 72, unknown 15.3
1913 Female, age 42, unknown 14.3
2087 Female, age 72, unknown 13.2
1895 Male, age 76, right hemisphere 13.0
2261 Male, age 18, unknown 12.0
1796 Male, age 53, unknown 11.6
1839 Male, age 51, unknown 11.1
2668 Female, age 75, unknown 10.7
2664 Male, age 75, both hemispheres 9.1
Ventral tegmental area
nTPM: 12.8
2410 Female, age 72, unknown 13.7
2218 Male, age 76, both hemispheres 13.4
1942 Male, age 51, unknown 13.0
2223 Female, age 72, unknown 13.0
2021 Male, age 53, unknown 12.0
1915 Female, age 42, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.4
GTEx sample id Sample description nTPM
5.57.08.82.213.102468101214161820222426
Brain - Substantia nigra
Average nTPM: 7.4
Samples: 183

Max nTPM: 27.4
Min nTPM: 2.2
Std nTPM: 2.8
Median nTPM: 7.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 27.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 15.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 15.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 15.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 14.8
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 13.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 12.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 12.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 12.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 12.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 7.9
Sample C Male 7.6
Sample D Male 8.4
6.87.38.16.49.40123456789
 		Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.4
Sample A Female 6.9
Sample B Female 9.4
Sample C Male 6.4
Sample D Male 7.6
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 15.2
Min nTPM: 9.9
Sample B Female 9.9
Sample C Male 12.4
Sample D Male 15.2
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 6.6
Sample C Male 6.6
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.2
Mouse sample Sample description nTPM
2.02.12.21.92.10.00.20.40.60.81.01.21.41.61.82.02.22.4
 		Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.9
Sample A Male 1.9
Sample B Male 2.5
Sample C Female 2.1
Sample D Female 2.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
633679 Antisense, RP_040907_02_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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