BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:6.5 nTPM
HPA Brain:15.3 nTPM
GTEx:6.5 nTPM
FANTOM5:21.7 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:2.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells05101520253035nCPM

CAUDATE - Antibody stainingi
Antibody HPA056694
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 15.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.6
2289 Male, age 61, right hemisphere 16.9
2481 Female, age 94, left hemisphere 15.8
1854 Male, age 80, left hemisphere 13.6
1857 Female, age 85, left hemisphere 13.2
2288 Male, age 75, left hemisphere 13.2
1781 Male, age 74, unknown 12.5
2290 Female, age 72, unknown 12.5
2846 Female, age 79, unknown 10.8
Globus pallidus, externus
nTPM: 13.8
1996 Male, age 80, right hemisphere 17.9
2772 Female, age 79, unknown 15.3
2395 Male, age 75, both hemispheres 13.7
2567 Female, age 72, unknown 11.5
2646 Male, age 61, right hemisphere 10.5
Globus pallidus, internus
nTPM: 14.2
2778 Female, age 91, both hemispheres 16.1
1818 Male, age 74, unknown 15.4
2111 Female, age 85, right hemisphere 14.9
2037 Male, age 80, right hemisphere 14.7
2287 Male, age 75, right hemisphere 13.6
2566 Female, age 72, unknown 12.9
2483 Female, age 94, right hemisphere 12.1
Nucleus accumbens
nTPM: 13.7
2391 Female, age 94, left hemisphere 19.0
2732 Male, age 80, right hemisphere 16.3
2286 Male, age 75, left hemisphere 13.6
1783 Male, age 74, unknown 13.4
1806 Female, age 85, left hemisphere 12.4
1856 Female, age 91, right hemisphere 11.8
2698 Female, age 72, unknown 11.8
2824 Male, age 61, right hemisphere 11.5
Nucleus basalis of Meynert
nTPM: 12.8
2821 Male, age 75, both hemispheres 15.7
2393 Male, age 80, right hemisphere 13.7
2484 Female, age 94, left hemisphere 11.1
2569 Male, age 61, both hemispheres 10.8
Nucleus of the diagonal band
nTPM: 14.0
2029 Male, age 61, right hemisphere 15.7
2195 Female, age 85, both hemispheres 14.9
1812 Female, age 91, both hemispheres 14.7
2775 Male, age 80, right hemisphere 13.1
1979 Male, age 74, unknown 11.5
Putamen
nTPM: 11.7
1937 Female, age 91, right hemisphere 14.8
2482 Female, age 94, left hemisphere 13.9
1829 Male, age 74, unknown 12.3
2466 Female, age 79, unknown 11.5
2647 Male, age 75, left hemisphere 10.0
2489 Female, age 72, unknown 9.9
1838 Male, age 80, right hemisphere 9.6
Septal nuclei
nTPM: 15.3
2629 Female, age 94, right hemisphere 17.5
2199 Male, age 80, right hemisphere 15.6
2031 Female, age 72, unknown 15.5
2059 Female, age 85, both hemispheres 15.2
2394 Male, age 61, left hemisphere 14.8
2009 Female, age 91, both hemispheres 14.6
1960 Male, age 74, unknown 13.8
Stria terminalis, bed nucleus
nTPM: 14.0
2486 Female, age 94, both hemispheres 15.9
1974 Female, age 91, both hemispheres 13.8
2201 Male, age 74, unknown 12.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 6.5
GTEx sample id Sample description nTPM
5.26.47.43.010.4012345678910111213
Brain - Caudate (basal ganglia)
Average nTPM: 6.5
Samples: 300

Max nTPM: 13.4
Min nTPM: 3.0
Std nTPM: 1.7
Median nTPM: 6.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 13.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 11.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 11.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 11.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 11.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 10.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 10.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 10.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 10.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 10.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 10.0
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4.75.76.92.29.90246810121416182022
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.9
Samples: 285

Max nTPM: 23.8
Min nTPM: 2.2
Std nTPM: 1.8
Median nTPM: 5.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 23.8
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 10.4
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 10.3
GTEX-11H98-0011-R6a-SM-GI4W1 50-59 years, male 9.9
GTEX-1O9I2-0011-R6a-SM-F3K52 50-59 years, male 9.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 9.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 9.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 9.0
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 9.0
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 8.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 8.9
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4.95.97.02.49.90246810121416
Brain - Putamen (basal ganglia)
Average nTPM: 6.0
Samples: 254

Max nTPM: 17.3
Min nTPM: 2.4
Std nTPM: 1.7
Median nTPM: 5.9
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 17.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 12.5
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 9.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 9.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 9.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 9.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 9.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 9.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 9.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 8.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 8.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.7
FF:10164-103B2 76 years, female 21.7
Nucleus accumbens
Scaled Tags Per Million: 18.2
FF:10037-101F1 23-56 years, mixed 18.2
Putamen
Scaled Tags Per Million: 20.9
FF:10176-103C5 60 years, female 20.9
Globus pallidus
Scaled Tags Per Million: 17.0
FF:10161-103A8 76 years, female 24.7
FF:10175-103C4 60 years, female 9.4

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 10.7
Pig sample Sample description nTPM
10.210.811.39.611.601234567891011
 		Caudate
nTPM: 10.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.6
Sample A Female 11.6
Sample B Female 10.4
Sample C Male 9.6
Sample D Male 11.2
9.19.49.68.310.0012345678910
 		Putamen
nTPM: 9.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 9.5
Sample C Male 10.0
Sample D Male 9.3
10.010.611.310.011.701234567891011
 		Septum
nTPM: 10.7
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.0
Sample A Female 11.2
Sample B Female 10.0
Sample C Male 10.0
Sample D Male 11.7
9.610.310.88.011.401234567891011
 		Ventral pallidum
nTPM: 10.0
Samples: 4

Max nTPM: 11.4
Min nTPM: 8.0
Sample A Female 10.1
Sample B Female 10.6
Sample C Male 8.0
Sample D Male 11.4

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 2.0
Mouse sample Sample description nTPM
1.01.01.01.01.00.00.10.20.30.40.50.60.70.80.91.01.1
 		Caudate putamen
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 1.0
Sample A Male 1.1
Sample B Male 1.0
Sample C Female 1.0
Sample D Female 1.0
1.62.02.41.12.80.00.20.40.60.81.01.21.41.61.82.02.22.42.62.8
 		Septum
nTPM: 2.0
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 2.8
Sample C Female 2.3
Sample D Female 1.7
1.51.61.61.61.70.00.20.40.60.81.01.21.41.6
 		Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 1.6
Sample C Female 1.6
Sample D Female 1.7

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
633679 Antisense, RP_040907_02_A11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
633679 Antisense, RP_040907_02_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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