MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:145.9 nTPM
HPA Brain:135.3 nTPM
GTEx:145.9 nTPM
FANTOM5:84.0 Scaled Tags Per Million
Pig:48.2 nTPM
Mouse:27.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 135.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.2
2586 Male, age 75, left hemisphere 175.0
2666 Male, age 74, left hemisphere 137.6
2828 Female, age 72, unknown 134.9
2019 Male, age 18, unknown 111.8
1833 Male, age 53, unknown 109.9
1830 Male, age 51, unknown 106.7
2411 Female, age 72, unknown 105.2
1870 Female, age 42, unknown 105.0
1827 Male, age 72, unknown 89.1
2219 Male, age 76, both hemispheres 77.0
Dorsal raphe nucleus
nTPM: 88.2
2016 Female, age 72, unknown 108.4
2750 Male, age 76, both hemispheres 99.2
1828 Male, age 53, unknown 85.6
2047 Male, age 72, unknown 79.9
2298 Female, age 72, unknown 68.0
Inferior colliculus
nTPM: 79.3
1890 Male, age 53, unknown 86.0
1848 Female, age 42, unknown 84.5
2849 Male, age 72, unknown 76.7
2097 Female, age 72, unknown 69.8
Median raphe nucleus
nTPM: 65.3
2220 Male, age 76, midline 65.3
Periaquaductal grey, anterior
nTPM: 101.5
2502 Female, age 75, unknown 119.0
1795 Male, age 51, unknown 93.9
1947 Male, age 18, unknown 91.7
Periaquaductal grey, dorsal
nTPM: 74.0
2464 Female, age 72, unknown 90.1
1831 Male, age 72, unknown 82.9
1840 Male, age 53, unknown 63.8
2850 Male, age 76, both hemispheres 59.1
Periaquaductal grey, lateral
nTPM: 77.5
2053 Male, age 18, unknown 86.4
2272 Male, age 74, both hemispheres 75.3
2140 Male, age 76, both hemispheres 70.7
Pretectal area
nTPM: 84.3
2316 Male, age 76, right hemisphere 106.2
1815 Male, age 53, unknown 100.7
2007 Male, age 72, unknown 95.2
2407 Male, age 75, both hemispheres 95.2
1817 Female, age 42, unknown 92.9
2825 Male, age 18, unknown 83.1
1816 Male, age 51, unknown 76.7
1944 Female, age 72, unknown 73.1
2273 Male, age 74, both hemispheres 71.5
2224 Female, age 72, unknown 68.9
2667 Female, age 75, unknown 63.7
Red nucleus
nTPM: 135.3
2503 Female, age 72, unknown 167.4
2588 Male, age 74, left hemisphere 164.5
2769 Male, age 72, unknown 148.8
1904 Male, age 53, unknown 148.7
2227 Male, age 72, unknown 148.4
2785 Male, age 18, unknown 135.7
1865 Male, age 51, unknown 131.2
1954 Female, age 42, unknown 125.6
2584 Male, age 75, left hemisphere 124.9
2725 Female, age 75, unknown 117.1
1821 Female, age 72, unknown 107.3
2823 Male, age 76, right hemisphere 103.5
Substantia nigra
nTPM: 93.5
2590 Female, age 75, unknown 116.0
2583 Male, age 75, right hemisphere 115.4
2665 Male, age 74, both hemispheres 109.1
1851 Male, age 51, unknown 105.3
2699 Male, age 18, unknown 96.4
2409 Female, age 72, unknown 90.5
1889 Female, age 72, unknown 83.7
1916 Female, age 42, unknown 82.6
1941 Male, age 53, unknown 77.4
2241 Male, age 72, unknown 59.0
Superior colliculus
nTPM: 103.7
1995 Male, age 72, unknown 139.6
2664 Male, age 75, both hemispheres 122.6
1913 Female, age 42, unknown 118.6
2587 Male, age 74, left hemisphere 111.3
2668 Female, age 75, unknown 101.8
1839 Male, age 51, unknown 101.6
1796 Male, age 53, unknown 96.1
2261 Male, age 18, unknown 94.7
2087 Female, age 72, unknown 80.3
1895 Male, age 76, right hemisphere 70.3
Ventral tegmental area
nTPM: 94.7
1942 Male, age 51, unknown 103.2
2410 Female, age 72, unknown 100.7
2223 Female, age 72, unknown 97.4
2021 Male, age 53, unknown 96.1
1915 Female, age 42, unknown 92.7
2218 Male, age 76, both hemispheres 78.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 145.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 145.9
Samples: 139

Max nTPM: 400.5
Min nTPM: 34.0
Std nTPM: 75.3
Median nTPM: 124.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 400.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 386.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 380.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 366.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 339.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 323.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 308.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 305.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 283.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 279.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 279.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.0
FF:10158-103A5 76 years, female 84.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.1
Samples: 4

Max nTPM: 55.4
Min nTPM: 41.1
Sample A Female 51.3
Sample B Female 44.6
Sample C Male 41.1
Sample D Male 55.4
Midbrain
nTPM: 48.2
Samples: 4

Max nTPM: 83.8
Min nTPM: 29.9
Sample A Female 83.8
Sample B Female 43.7
Sample C Male 35.2
Sample D Male 29.9
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 40.6
Min nTPM: 33.0
Sample B Female 40.6
Sample C Male 34.0
Sample D Male 33.0
Superior colliculi
nTPM: 43.3
Samples: 4

Max nTPM: 47.1
Min nTPM: 40.7
Sample A Female 47.1
Sample B Female 42.1
Sample C Male 40.7
Sample D Male 43.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.9
Samples: 4

Max nTPM: 32.8
Min nTPM: 25.0
Sample A Male 32.8
Sample B Male 26.5
Sample C Female 25.0
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
76081088 Antisense, RP_060608_04_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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