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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
6609.6
nTPM
FANTOM5:
6183.3
Scaled Tags Per Million
Pig:
4035.4
nTPM
Allen mouse:
20.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6609.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 6609.6
2301
Female, age 85, both hemispheres
8010.7
2188
Female, age 91, both hemispheres
7556.2
2090
Male, age 80, both hemispheres
7335.7
1984
Male, age 76, both hemispheres
3535.6
Dorsal cochlear nucleus nTPM: 5093.7
2187
Female, age 91, both hemispheres
6966.1
2378
Male, age 80, both hemispheres
5906.1
2802
Male, age 74, right hemisphere
4544.5
2058
Male, age 76, both hemispheres
4269.7
2370
Male, age 61, both hemispheres
3782.0
Dorsal tegmental nucleus nTPM: 4008.7
2083
Male, age 80, both hemispheres
6322.8
2326
Male, age 74, both hemispheres
4494.4
1936
Male, age 76, left hemisphere
3346.1
2358
Male, age 61, both hemispheres
1871.3
Dorsolateral tegmental area nTPM: 4412.1
2751
Female, age 85, both hemispheres
7440.4
2654
Male, age 80, both hemispheres
5985.8
2337
Male, age 61, both hemispheres
3818.7
2360
Male, age 74, both hemispheres
2867.4
2141
Male, age 76, both hemispheres
1948.1
Kolliker-Fuse nucleus nTPM: 5139.6
2793
Female, age 91, left hemisphere
7144.7
2163
Male, age 80, both hemispheres
4641.4
2315
Male, age 76, right hemisphere
3632.6
Lateral lemniscal nuclei nTPM: 4397.2
2320
Female, age 91, left hemisphere
5897.7
2036
Male, age 80, both hemispheres
4585.4
2169
Male, age 76, both hemispheres
4088.7
2746
Female, age 85, left hemisphere
3973.8
2453
Male, age 74, right hemisphere
3440.6
Lateral parabrachial nucleus nTPM: 5454.2
2792
Male, age 76, both hemispheres
9031.2
2013
Male, age 80, both hemispheres
5983.7
2139
Female, age 85, right hemisphere
3595.2
2790
Male, age 61, both hemispheres
3206.6
Lateral vestibular nucleus nTPM: 5254.2
2311
Male, age 80, both hemispheres
6564.7
2184
Male, age 76, both hemispheres
3943.7
Locus coeruleus nTPM: 2252.1
2162
Male, age 80, both hemispheres
3235.3
2720
Male, age 74, both hemispheres
2839.2
2317
Female, age 72, unknown
2338.5
2123
Female, age 91, both hemispheres
2225.1
2788
Male, age 74, unknown
2122.4
2014
Male, age 55, unknown
1856.0
1980
Male, age 76, both hemispheres
1148.4
Medial parabrachial nucleus nTPM: 5247.8
2170
Female, age 91, both hemispheres
7405.2
2854
Male, age 80, both hemispheres
5606.9
2463
Female, age 85, right hemisphere
5536.3
2786
Male, age 76, both hemispheres
4482.6
2156
Male, age 61, both hemispheres
3208.0
Medial periolivary nuclei nTPM: 5069.3
2458
Female, age 91, both hemispheres
6060.0
2791
Male, age 74, right hemisphere
5965.9
2081
Male, age 80, both hemispheres
5874.5
2063
Male, age 76, both hemispheres
4740.7
2171
Female, age 85, both hemispheres
2705.3
Motor facial nucleus nTPM: 5250.3
2126
Male, age 61, both hemispheres
7251.2
2365
Male, age 74, right hemisphere
5993.7
2697
Female, age 85, both hemispheres
5734.7
2795
Female, age 91, both hemispheres
4890.7
2327
Male, age 80, both hemispheres
3965.5
2062
Male, age 76, both hemispheres
3665.8
Motor trigeminal nucleus nTPM: 4631.9
2321
Female, age 91, both hemispheres
6363.2
2560
Male, age 74, both hemispheres
4994.6
2309
Male, age 76, both hemispheres
4216.3
2335
Male, age 61, both hemispheres
3982.2
2079
Male, age 80, both hemispheres
3603.3
Nuclei of the trapezoid body nTPM: 4492.7
2166
Male, age 80, both hemispheres
6256.5
2368
Female, age 91, both hemispheres
5357.3
2159
Male, age 61, both hemispheres
4599.8
1983
Male, age 76, both hemispheres
4029.0
2735
Female, age 85, both hemispheres
2220.8
Nucleus raphe magnus nTPM: 4041.6
2459
Female, age 91, both hemispheres
5677.1
2328
Male, age 80, both hemispheres
5516.2
2051
Male, age 76, both hemispheres
5068.5
2455
Male, age 74, both hemispheres
4019.1
2160
Male, age 61, both hemispheres
2281.9
2172
Female, age 85, both hemispheres
1686.5
Paramedian reticular nucleus nTPM: 5368.9
2052
Male, age 76, both hemispheres
6588.0
2057
Male, age 80, both hemispheres
5782.7
2050
Female, age 85, both hemispheres
4646.9
2313
Male, age 61, both hemispheres
4457.9
Pedunculopontine tegmental nucleus nTPM: 3917.9
2334
Male, age 80, both hemispheres
4801.7
1921
Female, age 85, both hemispheres
3823.0
2338
Male, age 61, both hemispheres
3129.0
Pontine nuclei nTPM: 5053.4
2454
Male, age 74, left hemisphere
8406.4
2319
Female, age 91, both hemispheres
6593.6
2109
Female, age 72, unknown
6440.8
2115
Male, age 80, left hemisphere
4796.7
1863
Male, age 55, unknown
4597.6
1968
Male, age 76, left hemisphere
4552.8
2727
Male, age 61, right hemisphere
2881.5
2787
Female, age 85, both hemispheres
2158.0
Pontine raphe nucleus nTPM: 2885.9
2853
Male, age 76, midline
2946.9
2122
Female, age 85, midline
2825.0
Posteroventral cochlear nucleus nTPM: 6341.2
2341
Male, age 80, both hemispheres
8774.5
2135
Female, age 91, both hemispheres
7580.4
2070
Male, age 76, both hemispheres
6558.6
2371
Male, age 61, both hemispheres
4926.5
2752
Female, age 85, both hemispheres
3866.0
Principal sensory trigeminal nucleus nTPM: 4326.0
2367
Female, age 91, left hemisphere
6279.2
2324
Male, age 76, both hemispheres
3849.9
2008
Male, age 80, left hemisphere
3589.7
2158
Male, age 61, both hemispheres
3585.1
Reticular pontine nucleus, caudal nTPM: 5425.0
2457
Female, age 91, both hemispheres
6405.9
2559
Male, age 74, both hemispheres
6133.9
2092
Male, age 76, both hemispheres
5742.8
2332
Male, age 80, right hemisphere
3417.4
Reticular pontine nucleus, oral nTPM: 5899.3
2361
Male, age 74, both hemispheres
7210.8
2366
Female, age 91, both hemispheres
6770.9
1939
Male, age 80, both hemispheres
5747.1
2167
Male, age 76, both hemispheres
5231.0
2012
Female, age 85, both hemispheres
4536.3
Reticulotegmental nucleus nTPM: 3910.4
2322
Female, age 91, both hemispheres
5652.8
2333
Male, age 80, both hemispheres
4444.9
2452
Male, age 74, both hemispheres
3487.5
2325
Male, age 76, both hemispheres
2056.2
Spinal trigeminal nucleus, oral nTPM: 4211.2
2164
Male, age 80, both hemispheres
4956.1
1978
Male, age 76, both hemispheres
4444.3
2737
Female, age 85, both hemispheres
3233.0
Subcoeruleus area nTPM: 4549.0
2369
Female, age 85, left hemisphere
8170.1
1958
Male, age 80, both hemispheres
4430.3
2089
Male, age 76, left hemisphere
4231.5
2323
Female, age 91, left hemisphere
3013.3
2451
Male, age 74, both hemispheres
2900.0
Superior olive nTPM: 5484.6
2020
Male, age 76, both hemispheres
6729.4
2364
Male, age 74, right hemisphere
5887.5
2329
Male, age 80, right hemisphere
5573.3
2561
Female, age 91, both hemispheres
5350.8
1875
Female, age 85, both hemispheres
3882.1
Ventral periolivary nuclei nTPM: 4746.6
2023
Male, age 76, both hemispheres
7518.1
2165
Male, age 80, both hemispheres
4660.8
2794
Female, age 91, left hemisphere
4118.6
2130
Female, age 85, both hemispheres
2689.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 5297.4
2456
Female, age 91, both hemispheres
6648.1
2359
Male, age 61, both hemispheres
5413.5
1959
Male, age 76, both hemispheres
5291.4
2161
Male, age 80, both hemispheres
5133.0
2840
Female, age 85, both hemispheres
4881.8
2449
Male, age 74, both hemispheres
4416.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4035.4
Pig sample
Sample description
nTPM
Pons nTPM: 4035.4
Samples: 4
Max nTPM: 6790.8
Min nTPM: 2774.9
Sample A
Female
2885.3
Sample B
Female
2774.9
Sample C
Male
3690.5
Sample D
Male
6790.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.