We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3192.0
nTPM
HPA Brain:
2928.5
nTPM
GTEx:
3192.0
nTPM
FANTOM5:
1961.7
Scaled Tags Per Million
Pig:
2460.4
nTPM
Mouse:
2195.0
nTPM
Allen mouse:
13.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA004128
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2928.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 2008.9
1911
Female, age 85, right hemisphere
2521.7
2621
Female, age 67, right hemisphere
2274.3
2529
Female, age 94, left hemisphere
2220.4
1898
Male, age 80, left hemisphere
2043.3
1855
Male, age 76, left hemisphere
1578.3
2148
Female, age 91, left hemisphere
1415.3
Dentate gyrus nTPM: 2153.1
2530
Female, age 94, left hemisphere
4483.8
2010
Male, age 76, both hemispheres
2220.3
2528
Male, age 74, both hemispheres
2144.0
2531
Female, age 67, both hemispheres
1512.9
2246
Female, age 85, both hemispheres
1486.8
1927
Female, age 91, both hemispheres
1071.1
Entorhinal gyrus nTPM: 2143.5
2117
Female, age 91, right hemisphere
4384.1
2764
Male, age 80, right hemisphere
2497.6
2686
Male, age 75, right hemisphere
1723.4
1938
Female, age 85, left hemisphere
1697.4
2613
Female, age 94, left hemisphere
1319.2
1787
Male, age 76, left hemisphere
1239.5
Hippocampus, CA1 nTPM: 1405.5
2527
Male, age 74, both hemispheres
2083.9
1873
Female, age 85, both hemispheres
1686.8
2082
Female, age 91, right hemisphere
1494.1
2749
Male, age 80, left hemisphere
1347.3
2045
Male, age 76, both hemispheres
415.2
Hippocampus, CA2 nTPM: 2130.7
2249
Male, age 74, both hemispheres
2981.5
1963
Male, age 80, left hemisphere
2948.3
2437
Female, age 94, left hemisphere
2203.8
1940
Female, age 85, left hemisphere
1937.6
2113
Female, age 91, right hemisphere
1725.1
1892
Male, age 76, both hemispheres
987.6
Hippocampus, CA3 nTPM: 1255.8
1891
Female, age 85, both hemispheres
2864.2
2436
Male, age 74, both hemispheres
1459.9
1867
Male, age 76, both hemispheres
1330.1
2137
Male, age 80, left hemisphere
714.2
2620
Female, age 94, left hemisphere
607.3
2861
Female, age 67, both hemispheres
559.3
Parahippocampal cortex nTPM: 1435.7
2532
Female, age 72, left hemisphere
2478.8
2692
Male, age 74, both hemispheres
1865.2
1990
Female, age 91, right hemisphere
1846.5
1850
Male, age 80, both hemispheres
1635.1
1933
Female, age 85, both hemispheres
1418.0
2018
Male, age 76, both hemispheres
1399.0
2245
Female, age 91, both hemispheres
1381.6
2250
Female, age 67, right hemisphere
925.5
2693
Female, age 94, both hemispheres
891.9
2622
Female, age 67, right hemisphere
514.9
Perirhinal gyrus nTPM: 840.2
2521
Female, age 94, right hemisphere
929.2
1794
Male, age 80, right hemisphere
903.4
2848
Male, age 76, right hemisphere
873.6
1847
Female, age 91, left hemisphere
800.8
1841
Female, age 85, right hemisphere
693.7
Subiculum nTPM: 2928.5
2042
Male, age 76, both hemispheres
4509.1
1901
Male, age 80, both hemispheres
3749.7
1977
Female, age 85, both hemispheres
2722.4
2438
Female, age 94, left hemisphere
2511.7
2619
Male, age 74, both hemispheres
2107.6
2729
Female, age 91, right hemisphere
1970.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3192.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 3192.0
Samples: 197
Max nTPM: 9499.9
Min nTPM: 45.4
Std nTPM: 1899.3
Median nTPM: 2607.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
9499.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
8920.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
8214.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
8169.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
7648.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
7364.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
7342.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
6941.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
6725.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
6676.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
6676.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
6655.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
6619.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
6592.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
6549.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
6541.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
6363.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
6339.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
6133.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
6010.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
5981.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
5885.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
5856.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
5710.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
5613.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
5495.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
5448.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
5440.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
5428.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
5377.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
5348.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
5309.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
5198.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
5154.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
5104.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
5098.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
4984.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
4936.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
4925.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
4886.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
4854.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
4842.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4757.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
4640.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
4557.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
4522.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
4473.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
4470.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
4461.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
4433.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
4404.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
4321.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
4282.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
4215.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
4211.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
4081.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
4065.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
4029.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
4022.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
3929.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
3896.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
3873.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
3864.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
3779.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
3727.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
3694.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
3649.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
3633.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
3629.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
3625.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
3602.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
3590.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
3572.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
3484.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
3430.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
3387.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
3351.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
3267.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
3224.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
3208.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
3176.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
3176.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
3175.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
3153.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
3131.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
3103.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
3072.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
3017.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
3013.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
3009.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
2992.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
2966.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
2939.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
2874.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
2868.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
2777.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
2716.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
2670.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
2607.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
2586.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
2542.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
2523.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
2514.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
2514.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
2509.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
2482.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
2465.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
2453.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
2442.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
2386.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
2334.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
2328.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
2322.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
2310.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
2286.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
2251.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
2244.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
2239.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
2234.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
2190.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
2190.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
2185.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
2180.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
2180.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
2160.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
2154.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
2148.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
2125.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
2081.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
2022.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
2001.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
1996.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
1987.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
1976.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
1932.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
1862.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
1859.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1834.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1828.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
1820.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
1778.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1764.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
1718.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
1713.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1712.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
1706.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
1668.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
1644.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
1643.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
1637.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1635.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1621.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1585.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1579.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
1569.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
1557.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1548.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
1547.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
1545.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1539.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
1536.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
1524.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1517.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
1485.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
1481.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1478.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1462.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
1459.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1436.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1424.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1420.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
1414.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1400.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
1362.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
1337.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1333.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1267.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
1247.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
1194.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1162.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1144.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1143.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1100.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1078.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1075.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
977.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
890.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
807.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
806.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
727.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
700.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
664.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
611.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
510.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
263.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
244.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
45.4
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2195.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1013.5
Samples: 4
Max nTPM: 1401.9
Min nTPM: 450.6
Sample A
Male
1401.9
Sample B
Male
1033.5
Sample C
Female
1167.9
Sample D
Female
450.6
Hippocampal formation nTPM: 2195.1
Samples: 4
Max nTPM: 3407.1
Min nTPM: 1494.0
Sample A
Male
1494.0
Sample B
Male
1695.9
Sample C
Female
3407.1
Sample D
Female
2183.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.