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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3980.0
nTPM
HPA Brain:
5557.0
nTPM
GTEx:
3980.0
nTPM
FANTOM5:
8755.6
Scaled Tags Per Million
Pig:
7566.8
nTPM
Mouse:
4634.4
nTPM
Allen mouse:
21.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5557.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 4208.4
2411
Female, age 72, unknown
6143.8
1830
Male, age 51, unknown
5597.2
1870
Female, age 42, unknown
5433.7
2019
Male, age 18, unknown
5330.1
1833
Male, age 53, unknown
5308.7
2828
Female, age 72, unknown
4123.2
2219
Male, age 76, both hemispheres
3184.8
1827
Male, age 72, unknown
2899.4
2666
Male, age 74, left hemisphere
2383.4
2586
Male, age 75, left hemisphere
1680.1
Dorsal raphe nucleus nTPM: 3346.7
2750
Male, age 76, both hemispheres
6768.9
2016
Female, age 72, unknown
3540.9
1828
Male, age 53, unknown
2895.5
2298
Female, age 72, unknown
1811.6
2047
Male, age 72, unknown
1716.6
Inferior colliculus nTPM: 2640.4
1848
Female, age 42, unknown
2892.9
1890
Male, age 53, unknown
2796.1
2849
Male, age 72, unknown
2542.0
2097
Female, age 72, unknown
2330.6
Median raphe nucleus nTPM: 2924.8
2220
Male, age 76, midline
2924.8
Periaquaductal grey, anterior nTPM: 2400.8
2502
Female, age 75, unknown
3155.6
1947
Male, age 18, unknown
2336.8
1795
Male, age 51, unknown
1709.9
Periaquaductal grey, dorsal nTPM: 1699.9
2464
Female, age 72, unknown
2989.3
1831
Male, age 72, unknown
1972.6
2850
Male, age 76, both hemispheres
944.7
1840
Male, age 53, unknown
893.1
Periaquaductal grey, lateral nTPM: 2140.5
2272
Male, age 74, both hemispheres
2918.8
2053
Male, age 18, unknown
2489.5
2140
Male, age 76, both hemispheres
1013.2
Pretectal area nTPM: 2618.5
2316
Male, age 76, right hemisphere
4110.5
1815
Male, age 53, unknown
3722.5
2407
Male, age 75, both hemispheres
3365.7
1817
Female, age 42, unknown
2890.0
2273
Male, age 74, both hemispheres
2795.9
2825
Male, age 18, unknown
2666.7
2007
Male, age 72, unknown
2664.7
2224
Female, age 72, unknown
2140.3
1944
Female, age 72, unknown
1548.9
2667
Female, age 75, unknown
1521.9
1816
Male, age 51, unknown
1376.8
Red nucleus nTPM: 5557.0
1865
Male, age 51, unknown
7382.3
1821
Female, age 72, unknown
7359.3
2823
Male, age 76, right hemisphere
7096.5
1904
Male, age 53, unknown
6452.2
2785
Male, age 18, unknown
5963.9
2769
Male, age 72, unknown
5742.3
2227
Male, age 72, unknown
5660.3
2503
Female, age 72, unknown
5415.4
1954
Female, age 42, unknown
5202.6
2725
Female, age 75, unknown
3823.2
2588
Male, age 74, left hemisphere
3301.5
2584
Male, age 75, left hemisphere
3285.0
Substantia nigra nTPM: 2772.6
2590
Female, age 75, unknown
3635.2
1851
Male, age 51, unknown
3425.9
1889
Female, age 72, unknown
3400.8
2409
Female, age 72, unknown
3217.3
2583
Male, age 75, right hemisphere
2918.8
2241
Male, age 72, unknown
2490.9
2699
Male, age 18, unknown
2476.0
1941
Male, age 53, unknown
2442.7
1916
Female, age 42, unknown
2127.5
2665
Male, age 74, both hemispheres
1591.2
Superior colliculus nTPM: 3543.9
1913
Female, age 42, unknown
5393.0
1995
Male, age 72, unknown
5134.3
1895
Male, age 76, right hemisphere
4768.8
2587
Male, age 74, left hemisphere
4555.4
2668
Female, age 75, unknown
4008.7
1839
Male, age 51, unknown
3733.3
1796
Male, age 53, unknown
2669.5
2087
Female, age 72, unknown
1959.9
2261
Male, age 18, unknown
1661.0
2664
Male, age 75, both hemispheres
1554.9
Ventral tegmental area nTPM: 3680.9
2223
Female, age 72, unknown
5856.9
2410
Female, age 72, unknown
4262.1
2218
Male, age 76, both hemispheres
3266.2
2021
Male, age 53, unknown
3039.0
1942
Male, age 51, unknown
2968.8
1915
Female, age 42, unknown
2692.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3980.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 3980.0
Samples: 139
Max nTPM: 13380.0
Min nTPM: 681.3
Std nTPM: 2095.1
Median nTPM: 3462.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
13380.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10206.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
9475.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
9191.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
8843.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
8553.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
8359.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
8259.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
8162.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
8101.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7671.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7391.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7129.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6995.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
6575.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
6549.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6512.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
6485.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
6255.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
6093.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
6034.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
6014.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
5825.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
5790.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5762.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
5601.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5464.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
5430.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
5296.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
5244.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5193.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
5169.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5112.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
4993.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4890.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4882.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4755.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
4727.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4672.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
4654.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
4595.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
4550.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
4525.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
4523.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
4329.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4295.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
4200.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
4197.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
4172.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
4156.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
4019.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
3971.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3922.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
3910.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3871.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
3812.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
3797.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3746.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3741.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
3729.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3713.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
3697.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3674.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3660.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
3650.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
3554.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
3512.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3497.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
3490.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3462.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3409.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3409.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
3379.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
3314.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
3306.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
3283.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
3245.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3204.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
3102.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
3055.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
3046.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3037.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
3035.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3015.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3014.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2992.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2961.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2956.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
2951.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2947.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2932.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2919.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
2885.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2884.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
2851.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
2833.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2809.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
2785.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
2735.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2664.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2661.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
2628.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2549.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2541.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
2541.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2536.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2514.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2508.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
2503.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2503.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2473.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2453.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
2433.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
2302.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2294.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
2227.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2198.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2148.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2109.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2074.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2021.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1922.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1884.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1871.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1862.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1841.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1838.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1819.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1718.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1706.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1684.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1607.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
1594.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1419.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1401.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1378.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1048.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1046.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
681.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4634.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 4634.4
Samples: 4
Max nTPM: 5203.3
Min nTPM: 4072.7
Sample A
Male
4107.8
Sample B
Male
4072.7
Sample C
Female
5153.6
Sample D
Female
5203.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.