MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA Brain:30.7 nTPM
GTEx:48.4 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:57.2 nTPM
Mouse:86.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2019 Male, age 18, unknown 30.3
1870 Female, age 42, unknown 28.3
2586 Male, age 75, left hemisphere 23.4
2219 Male, age 76, both hemispheres 23.2
1833 Male, age 53, unknown 22.5
2411 Female, age 72, unknown 21.6
1827 Male, age 72, unknown 21.3
2828 Female, age 72, unknown 20.2
1830 Male, age 51, unknown 20.1
2666 Male, age 74, left hemisphere 20.1
Dorsal raphe nucleus
nTPM: 26.3
2298 Female, age 72, unknown 31.7
2750 Male, age 76, both hemispheres 27.3
1828 Male, age 53, unknown 25.2
2016 Female, age 72, unknown 23.8
2047 Male, age 72, unknown 23.7
Inferior colliculus
nTPM: 21.4
2849 Male, age 72, unknown 21.8
1890 Male, age 53, unknown 21.7
2097 Female, age 72, unknown 21.6
1848 Female, age 42, unknown 20.5
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Periaquaductal grey, anterior
nTPM: 22.4
2502 Female, age 75, unknown 24.6
1947 Male, age 18, unknown 22.1
1795 Male, age 51, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 21.5
2850 Male, age 76, both hemispheres 28.0
1840 Male, age 53, unknown 21.0
1831 Male, age 72, unknown 20.1
2464 Female, age 72, unknown 17.1
Periaquaductal grey, lateral
nTPM: 21.0
2272 Male, age 74, both hemispheres 23.3
2140 Male, age 76, both hemispheres 20.3
2053 Male, age 18, unknown 19.3
Pretectal area
nTPM: 25.9
1817 Female, age 42, unknown 30.6
2007 Male, age 72, unknown 30.6
1944 Female, age 72, unknown 28.0
2667 Female, age 75, unknown 28.0
1815 Male, age 53, unknown 27.5
1816 Male, age 51, unknown 27.2
2224 Female, age 72, unknown 25.3
2273 Male, age 74, both hemispheres 23.4
2407 Male, age 75, both hemispheres 22.9
2316 Male, age 76, right hemisphere 20.6
2825 Male, age 18, unknown 20.3
Red nucleus
nTPM: 24.2
1821 Female, age 72, unknown 32.4
1865 Male, age 51, unknown 28.3
2785 Male, age 18, unknown 28.1
1904 Male, age 53, unknown 27.3
1954 Female, age 42, unknown 26.2
2725 Female, age 75, unknown 24.4
2227 Male, age 72, unknown 23.8
2503 Female, age 72, unknown 23.5
2769 Male, age 72, unknown 22.6
2823 Male, age 76, right hemisphere 21.2
2584 Male, age 75, left hemisphere 16.9
2588 Male, age 74, left hemisphere 15.1
Substantia nigra
nTPM: 27.4
1916 Female, age 42, unknown 33.9
2409 Female, age 72, unknown 33.4
2241 Male, age 72, unknown 31.2
1851 Male, age 51, unknown 30.0
1889 Female, age 72, unknown 28.8
2699 Male, age 18, unknown 25.6
1941 Male, age 53, unknown 25.3
2665 Male, age 74, both hemispheres 24.6
2583 Male, age 75, right hemisphere 20.9
2590 Female, age 75, unknown 20.7
Superior colliculus
nTPM: 22.5
1913 Female, age 42, unknown 24.5
2087 Female, age 72, unknown 24.3
2587 Male, age 74, left hemisphere 24.1
1796 Male, age 53, unknown 23.7
2668 Female, age 75, unknown 23.7
1895 Male, age 76, right hemisphere 22.3
1995 Male, age 72, unknown 20.9
2261 Male, age 18, unknown 20.8
1839 Male, age 51, unknown 20.7
2664 Male, age 75, both hemispheres 19.7
Ventral tegmental area
nTPM: 26.3
2218 Male, age 76, both hemispheres 29.1
2223 Female, age 72, unknown 27.3
2410 Female, age 72, unknown 27.2
1915 Female, age 42, unknown 26.9
1942 Male, age 51, unknown 24.9
2021 Male, age 53, unknown 22.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.4
Samples: 139

Max nTPM: 74.5
Min nTPM: 34.0
Std nTPM: 6.9
Median nTPM: 47.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 74.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 63.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 62.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 61.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 60.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 59.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 59.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 59.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.8
Samples: 4

Max nTPM: 58.1
Min nTPM: 41.9
Sample A Female 58.1
Sample B Female 41.9
Sample C Male 53.8
Sample D Male 57.5
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 79.3
Min nTPM: 46.3
Sample A Female 79.3
Sample B Female 46.3
Sample C Male 55.8
Sample D Male 47.3
Periaqueductal gray
nTPM: 45.5
Samples: 3

Max nTPM: 47.1
Min nTPM: 43.8
Sample B Female 43.8
Sample C Male 45.7
Sample D Male 47.1
Superior colliculi
nTPM: 52.5
Samples: 4

Max nTPM: 55.9
Min nTPM: 45.5
Sample A Female 53.2
Sample B Female 45.5
Sample C Male 55.9
Sample D Male 55.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 86.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.3
Samples: 4

Max nTPM: 90.3
Min nTPM: 79.2
Sample A Male 79.2
Sample B Male 90.3
Sample C Female 86.6
Sample D Female 89.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68632063 Antisense, RP_050125_01_F05, Mouse strain C57BL/6J (56 days, male) 1.8

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