HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:33.9 nTPM
HPA Brain:116.4 nTPM
GTEx:33.9 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:86.4 nTPM
Mouse:203.9 nTPM
Allen mouse:17.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0100200300400nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody CAB016680
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 116.4
Sample id Sample description nTPM
Hippocampus
nTPM: 111.9
2529 Female, age 94, left hemisphere 131.4
1898 Male, age 80, left hemisphere 115.6
1855 Male, age 76, left hemisphere 113.8
1911 Female, age 85, right hemisphere 105.9
2148 Female, age 91, left hemisphere 103.4
2621 Female, age 67, right hemisphere 101.0
Dentate gyrus
nTPM: 116.4
2010 Male, age 76, both hemispheres 128.5
2530 Female, age 94, left hemisphere 122.3
1927 Female, age 91, both hemispheres 114.2
2528 Male, age 74, both hemispheres 113.2
2531 Female, age 67, both hemispheres 110.7
2246 Female, age 85, both hemispheres 109.5
Entorhinal gyrus
nTPM: 98.6
2117 Female, age 91, right hemisphere 112.9
2764 Male, age 80, right hemisphere 107.0
1787 Male, age 76, left hemisphere 104.1
2686 Male, age 75, right hemisphere 99.0
1938 Female, age 85, left hemisphere 92.6
2613 Female, age 94, left hemisphere 76.1
Hippocampus, CA1
nTPM: 114.6
2749 Male, age 80, left hemisphere 125.3
1873 Female, age 85, both hemispheres 115.1
2082 Female, age 91, right hemisphere 112.9
2045 Male, age 76, both hemispheres 110.8
2527 Male, age 74, both hemispheres 109.1
Hippocampus, CA2
nTPM: 111.3
1963 Male, age 80, left hemisphere 124.9
2249 Male, age 74, both hemispheres 116.2
1892 Male, age 76, both hemispheres 115.2
1940 Female, age 85, left hemisphere 114.6
2113 Female, age 91, right hemisphere 102.5
2437 Female, age 94, left hemisphere 94.2
Hippocampus, CA3
nTPM: 112.6
1867 Male, age 76, both hemispheres 125.5
2436 Male, age 74, both hemispheres 120.0
2137 Male, age 80, left hemisphere 113.9
2861 Female, age 67, both hemispheres 106.6
2620 Female, age 94, left hemisphere 105.8
1891 Female, age 85, both hemispheres 103.9
Parahippocampal cortex
nTPM: 99.4
2018 Male, age 76, both hemispheres 114.9
1933 Female, age 85, both hemispheres 110.8
1990 Female, age 91, right hemisphere 105.8
2532 Female, age 72, left hemisphere 104.0
2245 Female, age 91, both hemispheres 100.0
1850 Male, age 80, both hemispheres 98.9
2250 Female, age 67, right hemisphere 95.8
2692 Male, age 74, both hemispheres 94.7
2693 Female, age 94, both hemispheres 91.8
2622 Female, age 67, right hemisphere 77.5
Perirhinal gyrus
nTPM: 107.3
1794 Male, age 80, right hemisphere 121.3
1847 Female, age 91, left hemisphere 111.3
1841 Female, age 85, right hemisphere 110.0
2521 Female, age 94, right hemisphere 103.8
2848 Male, age 76, right hemisphere 90.1
Subiculum
nTPM: 107.3
2042 Male, age 76, both hemispheres 116.8
1977 Female, age 85, both hemispheres 111.0
1901 Male, age 80, both hemispheres 110.0
2729 Female, age 91, right hemisphere 107.5
2619 Male, age 74, both hemispheres 107.3
2438 Female, age 94, left hemisphere 91.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 33.9
GTEx sample id Sample description nTPM
29.633.136.819.747.4051015202530354045505560
Brain - Hippocampus
Average nTPM: 33.9
Samples: 255

Max nTPM: 60.5
Min nTPM: 19.7
Std nTPM: 6.4
Median nTPM: 33.1
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 60.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 57.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 56.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 52.7
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 51.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 50.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 49.7
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 48.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 47.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 47.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 47.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 65.0
FF:10169-103B7 60 years, female 74.7
FF:10153-102I9 76 years, female 55.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 86.4
Pig sample Sample description nTPM
70.670.874.570.070.801020304050607080
 		Subiculum
nTPM: 74.3
Samples: 4

Max nTPM: 85.5
Min nTPM: 70.0
Sample A Female 85.5
Sample B Female 70.8
Sample C Male 70.0
Sample D Male 70.8
80.586.992.870.1101.60102030405060708090100
 		Dorsal hippocampus
nTPM: 86.4
Samples: 4

Max nTPM: 101.6
Min nTPM: 70.1
Sample A Female 101.6
Sample B Female 83.9
Sample C Male 89.9
Sample D Male 70.1
64.669.574.859.981.101020304050607080
 		Entorhinal cortex
nTPM: 70.0
Samples: 4

Max nTPM: 81.1
Min nTPM: 59.9
Sample A Female 66.2
Sample B Female 81.1
Sample C Male 72.7
Sample D Male 59.9
75.878.381.370.388.801020304050607080
 		Ventral hippocampus
nTPM: 78.9
Samples: 4

Max nTPM: 88.8
Min nTPM: 70.3
Sample A Female 88.8
Sample B Female 70.3
Sample C Male 78.8
Sample D Male 77.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 203.9
Mouse sample Sample description nTPM
152.6154.8159.1148.5155.5020406080100120140160
 		Entorhinal cortex
nTPM: 157.0
Samples: 4

Max nTPM: 169.9
Min nTPM: 148.5
Sample A Male 148.5
Sample B Male 155.5
Sample C Female 169.9
Sample D Female 154.0
196.7202.8210.1184.9224.9020406080100120140160180200220
 		Hippocampal formation
nTPM: 203.9
Samples: 4

Max nTPM: 224.9
Min nTPM: 184.9
Sample A Male 200.6
Sample B Male 205.1
Sample C Female 224.9
Sample D Female 184.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 17.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.2
641530 Antisense, RP_040914_01_E10, Mouse strain C57BL/6J (56 days, male) 19.6
74658110 Antisense, RP_060220_02_C06, Mouse strain C57BL/6J (56 days, male) 14.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo