BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:32.4 nTPM
HPA Brain:123.9 nTPM
GTEx:32.4 nTPM
FANTOM5:79.0 Scaled Tags Per Million
Pig:88.2 nTPM
Mouse:169.6 nTPM
Allen mouse:10.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0100200300400nCPM

CAUDATE - Antibody stainingi
Antibody CAB016680
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 123.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 112.5
2481 Female, age 94, left hemisphere 137.4
2288 Male, age 75, left hemisphere 114.8
2290 Female, age 72, unknown 111.4
1781 Male, age 74, unknown 110.6
2289 Male, age 61, right hemisphere 109.6
2846 Female, age 79, unknown 108.6
1854 Male, age 80, left hemisphere 107.0
1857 Female, age 85, left hemisphere 100.7
Globus pallidus, externus
nTPM: 117.7
2772 Female, age 79, unknown 135.7
2646 Male, age 61, right hemisphere 123.8
1996 Male, age 80, right hemisphere 116.6
2395 Male, age 75, both hemispheres 107.2
2567 Female, age 72, unknown 105.2
Globus pallidus, internus
nTPM: 123.9
2483 Female, age 94, right hemisphere 148.1
2287 Male, age 75, right hemisphere 138.2
2111 Female, age 85, right hemisphere 124.6
1818 Male, age 74, unknown 123.3
2778 Female, age 91, both hemispheres 119.3
2037 Male, age 80, right hemisphere 115.0
2566 Female, age 72, unknown 99.1
Nucleus accumbens
nTPM: 114.3
2286 Male, age 75, left hemisphere 123.0
2732 Male, age 80, right hemisphere 120.1
2391 Female, age 94, left hemisphere 118.4
1783 Male, age 74, unknown 117.3
2698 Female, age 72, unknown 113.3
1806 Female, age 85, left hemisphere 111.8
1856 Female, age 91, right hemisphere 108.8
2824 Male, age 61, right hemisphere 101.4
Nucleus basalis of Meynert
nTPM: 112.7
2484 Female, age 94, left hemisphere 121.3
2821 Male, age 75, both hemispheres 113.0
2569 Male, age 61, both hemispheres 112.4
2393 Male, age 80, right hemisphere 103.9
Nucleus of the diagonal band
nTPM: 102.9
1812 Female, age 91, both hemispheres 117.5
1979 Male, age 74, unknown 109.8
2775 Male, age 80, right hemisphere 103.8
2195 Female, age 85, both hemispheres 97.5
2029 Male, age 61, right hemisphere 86.1
Putamen
nTPM: 111.0
2482 Female, age 94, left hemisphere 134.4
2466 Female, age 79, unknown 113.6
1937 Female, age 91, right hemisphere 113.4
1838 Male, age 80, right hemisphere 111.5
2647 Male, age 75, left hemisphere 108.6
1829 Male, age 74, unknown 101.7
2489 Female, age 72, unknown 93.8
Septal nuclei
nTPM: 102.0
2199 Male, age 80, right hemisphere 112.1
2031 Female, age 72, unknown 108.9
2394 Male, age 61, left hemisphere 102.7
1960 Male, age 74, unknown 101.3
2059 Female, age 85, both hemispheres 99.5
2009 Female, age 91, both hemispheres 98.8
2629 Female, age 94, right hemisphere 90.7
Stria terminalis, bed nucleus
nTPM: 100.5
1974 Female, age 91, both hemispheres 107.3
2486 Female, age 94, both hemispheres 98.1
2201 Male, age 74, unknown 96.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 32.4
GTEx sample id Sample description nTPM
27.930.834.121.143.105101520253035404550556065
Brain - Caudate (basal ganglia)
Average nTPM: 31.7
Samples: 300

Max nTPM: 68.7
Min nTPM: 21.1
Std nTPM: 6.4
Median nTPM: 30.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 68.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 68.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 55.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 55.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 53.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 51.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 51.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 49.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 46.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 46.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 43.9
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26.829.733.319.841.405101520253035404550
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.3
Samples: 285

Max nTPM: 54.3
Min nTPM: 19.8
Std nTPM: 5.6
Median nTPM: 29.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 54.3
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 54.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 53.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 50.0
GTEX-1N2EF-0011-R6a-SM-F33ZJ 60-69 years, male 47.6
GTEX-1JN1M-0011-R6b-SM-G9EQ7 60-69 years, female 47.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 46.8
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 46.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 44.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 41.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 41.2
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28.431.435.321.245.305101520253035404550
Brain - Putamen (basal ganglia)
Average nTPM: 32.4
Samples: 254

Max nTPM: 53.5
Min nTPM: 21.2
Std nTPM: 5.8
Median nTPM: 31.4
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 53.5
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 53.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 50.9
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 50.7
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 49.7
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 49.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 47.4
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 47.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 47.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 45.7
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 45.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.8
FF:10164-103B2 76 years, female 63.8
Nucleus accumbens
Scaled Tags Per Million: 71.9
FF:10037-101F1 23-56 years, mixed 71.9
Putamen
Scaled Tags Per Million: 79.0
FF:10176-103C5 60 years, female 79.0
Globus pallidus
Scaled Tags Per Million: 63.0
FF:10161-103A8 76 years, female 64.9
FF:10175-103C4 60 years, female 61.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 88.2
Pig sample Sample description nTPM
70.572.273.468.074.5010203040506070
 		Caudate
nTPM: 71.7
Samples: 4

Max nTPM: 74.5
Min nTPM: 68.0
Sample A Female 71.3
Sample B Female 73.1
Sample C Male 74.5
Sample D Male 68.0
77.986.096.373.2107.70102030405060708090100
 		Putamen
nTPM: 88.2
Samples: 4

Max nTPM: 107.7
Min nTPM: 73.2
Sample A Female 92.5
Sample B Female 73.2
Sample C Male 107.7
Sample D Male 79.5
79.382.986.976.990.50102030405060708090
 		Septum
nTPM: 83.3
Samples: 4

Max nTPM: 90.5
Min nTPM: 76.9
Sample A Female 85.7
Sample B Female 76.9
Sample C Male 90.5
Sample D Male 80.1
76.878.680.774.983.201020304050607080
 		Ventral pallidum
nTPM: 78.8
Samples: 4

Max nTPM: 83.2
Min nTPM: 74.9
Sample A Female 77.4
Sample B Female 79.8
Sample C Male 83.2
Sample D Male 74.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 169.6
Mouse sample Sample description nTPM
139.7141.8145.2134.1142.2020406080100120140
 		Caudate putamen
nTPM: 143.0
Samples: 4

Max nTPM: 154.1
Min nTPM: 134.1
Sample A Male 141.5
Sample B Male 134.1
Sample C Female 154.1
Sample D Female 142.2
164.1172.8178.2151.6181.0020406080100120140160180
 		Septum
nTPM: 169.6
Samples: 4

Max nTPM: 181.0
Min nTPM: 151.6
Sample A Male 151.6
Sample B Male 181.0
Sample C Female 168.3
Sample D Female 177.3
146.1147.6149.4144.5152.2020406080100120140
 		Ventral forebrain
nTPM: 148.0
Samples: 4

Max nTPM: 152.2
Min nTPM: 144.5
Sample A Male 144.5
Sample B Male 146.6
Sample C Female 148.5
Sample D Female 152.2

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 10.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.6
641530 Antisense, RP_040914_01_E10, Mouse strain C57BL/6J (56 days, male) 11.7
74658110 Antisense, RP_060220_02_C06, Mouse strain C57BL/6J (56 days, male) 9.6
Pallidum
Expression energy: 8.9
641530 Antisense, RP_040914_01_E10, Mouse strain C57BL/6J (56 days, male) 10.1
74658110 Antisense, RP_060220_02_C06, Mouse strain C57BL/6J (56 days, male) 7.6

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