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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
323.1
nTPM
FANTOM5:
869.9
Scaled Tags Per Million
Pig:
1.8
nTPM
Allen mouse:
11.4
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
323.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 234.0
2188
Female, age 91, both hemispheres
272.2
2301
Female, age 85, both hemispheres
231.5
2090
Male, age 80, both hemispheres
226.9
1984
Male, age 76, both hemispheres
205.6
Dorsal cochlear nucleus nTPM: 218.2
2187
Female, age 91, both hemispheres
279.9
2802
Male, age 74, right hemisphere
238.7
2058
Male, age 76, both hemispheres
200.0
2370
Male, age 61, both hemispheres
186.5
2378
Male, age 80, both hemispheres
185.8
Dorsal tegmental nucleus nTPM: 273.1
2083
Male, age 80, both hemispheres
298.9
2326
Male, age 74, both hemispheres
296.1
2358
Male, age 61, both hemispheres
248.9
1936
Male, age 76, left hemisphere
248.4
Dorsolateral tegmental area nTPM: 264.3
2654
Male, age 80, both hemispheres
275.3
2360
Male, age 74, both hemispheres
270.0
2751
Female, age 85, both hemispheres
268.8
2337
Male, age 61, both hemispheres
260.6
2141
Male, age 76, both hemispheres
246.8
Kolliker-Fuse nucleus nTPM: 304.8
2163
Male, age 80, both hemispheres
339.4
2315
Male, age 76, right hemisphere
298.0
2793
Female, age 91, left hemisphere
277.0
Lateral lemniscal nuclei nTPM: 257.9
2169
Male, age 76, both hemispheres
312.8
2036
Male, age 80, both hemispheres
273.5
2746
Female, age 85, left hemisphere
251.6
2453
Male, age 74, right hemisphere
232.4
2320
Female, age 91, left hemisphere
219.1
Lateral parabrachial nucleus nTPM: 272.2
2139
Female, age 85, right hemisphere
353.1
2792
Male, age 76, both hemispheres
292.1
2013
Male, age 80, both hemispheres
252.4
2790
Male, age 61, both hemispheres
191.2
Lateral vestibular nucleus nTPM: 274.2
2184
Male, age 76, both hemispheres
295.7
2311
Male, age 80, both hemispheres
252.7
Locus coeruleus nTPM: 323.1
2788
Male, age 74, unknown
410.9
2123
Female, age 91, both hemispheres
407.0
2014
Male, age 55, unknown
377.7
2162
Male, age 80, both hemispheres
283.9
2720
Male, age 74, both hemispheres
271.2
1980
Male, age 76, both hemispheres
270.2
2317
Female, age 72, unknown
241.1
Medial parabrachial nucleus nTPM: 267.6
2854
Male, age 80, both hemispheres
325.1
2170
Female, age 91, both hemispheres
313.6
2786
Male, age 76, both hemispheres
253.3
2463
Female, age 85, right hemisphere
225.2
2156
Male, age 61, both hemispheres
220.8
Medial periolivary nuclei nTPM: 270.1
2791
Male, age 74, right hemisphere
323.0
2171
Female, age 85, both hemispheres
320.4
2063
Male, age 76, both hemispheres
281.6
2458
Female, age 91, both hemispheres
213.9
2081
Male, age 80, both hemispheres
211.4
Motor facial nucleus nTPM: 264.5
2365
Male, age 74, right hemisphere
345.0
2697
Female, age 85, both hemispheres
297.4
2062
Male, age 76, both hemispheres
273.3
2126
Male, age 61, both hemispheres
248.0
2795
Female, age 91, both hemispheres
211.8
2327
Male, age 80, both hemispheres
211.4
Motor trigeminal nucleus nTPM: 236.6
2079
Male, age 80, both hemispheres
253.3
2309
Male, age 76, both hemispheres
250.1
2560
Male, age 74, both hemispheres
237.6
2335
Male, age 61, both hemispheres
227.2
2321
Female, age 91, both hemispheres
214.9
Nuclei of the trapezoid body nTPM: 271.3
2159
Male, age 61, both hemispheres
318.8
1983
Male, age 76, both hemispheres
317.4
2735
Female, age 85, both hemispheres
297.1
2166
Male, age 80, both hemispheres
246.6
2368
Female, age 91, both hemispheres
176.6
Nucleus raphe magnus nTPM: 296.0
2160
Male, age 61, both hemispheres
389.3
2455
Male, age 74, both hemispheres
330.3
2172
Female, age 85, both hemispheres
316.0
2051
Male, age 76, both hemispheres
279.0
2328
Male, age 80, both hemispheres
249.1
2459
Female, age 91, both hemispheres
212.3
Paramedian reticular nucleus nTPM: 287.1
2050
Female, age 85, both hemispheres
333.5
2052
Male, age 76, both hemispheres
286.7
2057
Male, age 80, both hemispheres
264.2
2313
Male, age 61, both hemispheres
263.9
Pedunculopontine tegmental nucleus nTPM: 299.9
2338
Male, age 61, both hemispheres
313.6
2334
Male, age 80, both hemispheres
301.7
1921
Female, age 85, both hemispheres
284.4
Pontine nuclei nTPM: 303.9
1863
Male, age 55, unknown
361.3
2787
Female, age 85, both hemispheres
360.7
2454
Male, age 74, left hemisphere
343.1
2727
Male, age 61, right hemisphere
320.5
2109
Female, age 72, unknown
304.8
1968
Male, age 76, left hemisphere
274.5
2319
Female, age 91, both hemispheres
244.2
2115
Male, age 80, left hemisphere
222.6
Pontine raphe nucleus nTPM: 299.1
2122
Female, age 85, midline
310.8
2853
Male, age 76, midline
287.3
Posteroventral cochlear nucleus nTPM: 239.2
2752
Female, age 85, both hemispheres
290.6
2341
Male, age 80, both hemispheres
253.6
2070
Male, age 76, both hemispheres
240.7
2135
Female, age 91, both hemispheres
230.8
2371
Male, age 61, both hemispheres
180.2
Principal sensory trigeminal nucleus nTPM: 276.1
2158
Male, age 61, both hemispheres
300.7
2324
Male, age 76, both hemispheres
281.3
2008
Male, age 80, left hemisphere
271.1
2367
Female, age 91, left hemisphere
251.1
Reticular pontine nucleus, caudal nTPM: 268.1
2559
Male, age 74, both hemispheres
305.2
2092
Male, age 76, both hemispheres
304.9
2457
Female, age 91, both hemispheres
231.9
2332
Male, age 80, right hemisphere
230.5
Reticular pontine nucleus, oral nTPM: 306.3
2361
Male, age 74, both hemispheres
441.7
1939
Male, age 80, both hemispheres
304.7
2012
Female, age 85, both hemispheres
271.7
2167
Male, age 76, both hemispheres
268.6
2366
Female, age 91, both hemispheres
245.0
Reticulotegmental nucleus nTPM: 242.7
2325
Male, age 76, both hemispheres
269.9
2322
Female, age 91, both hemispheres
246.2
2333
Male, age 80, both hemispheres
242.2
2452
Male, age 74, both hemispheres
212.4
Spinal trigeminal nucleus, oral nTPM: 251.3
2737
Female, age 85, both hemispheres
270.7
2164
Male, age 80, both hemispheres
258.1
1978
Male, age 76, both hemispheres
225.0
Subcoeruleus area nTPM: 260.0
1958
Male, age 80, both hemispheres
304.4
2323
Female, age 91, left hemisphere
293.1
2369
Female, age 85, left hemisphere
274.8
2451
Male, age 74, both hemispheres
214.7
2089
Male, age 76, left hemisphere
213.1
Superior olive nTPM: 270.1
2364
Male, age 74, right hemisphere
328.5
1875
Female, age 85, both hemispheres
321.5
2020
Male, age 76, both hemispheres
261.5
2329
Male, age 80, right hemisphere
230.0
2561
Female, age 91, both hemispheres
209.1
Ventral periolivary nuclei nTPM: 275.8
2130
Female, age 85, both hemispheres
335.0
2165
Male, age 80, both hemispheres
288.0
2023
Male, age 76, both hemispheres
284.0
2794
Female, age 91, left hemisphere
196.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 255.2
2840
Female, age 85, both hemispheres
326.9
1959
Male, age 76, both hemispheres
277.0
2359
Male, age 61, both hemispheres
262.4
2449
Male, age 74, both hemispheres
255.3
2161
Male, age 80, both hemispheres
227.5
2456
Female, age 91, both hemispheres
181.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.8
Pig sample
Sample description
nTPM
Pons nTPM: 1.8
Samples: 4
Max nTPM: 2.6
Min nTPM: 1.1
Sample A
Female
2.6
Sample B
Female
1.1
Sample C
Male
1.4
Sample D
Male
2.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
