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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
182.1
nTPM
HPA Brain:
351.2
nTPM
GTEx:
182.1
nTPM
FANTOM5:
233.1
Scaled Tags Per Million
Pig:
163.9
nTPM
Mouse:
100.2
nTPM
Allen mouse:
10.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA074314
Antibody CAB002500
Antibody CAB010893
Glial cells
Not detected
High
Medium
Neuronal cells
Medium
Low
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
351.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 347.1
2621
Female, age 67, right hemisphere
421.3
1855
Male, age 76, left hemisphere
390.3
1911
Female, age 85, right hemisphere
372.1
2148
Female, age 91, left hemisphere
336.5
2529
Female, age 94, left hemisphere
289.6
1898
Male, age 80, left hemisphere
272.9
Dentate gyrus nTPM: 319.0
2010
Male, age 76, both hemispheres
374.8
1927
Female, age 91, both hemispheres
369.6
2531
Female, age 67, both hemispheres
329.5
2530
Female, age 94, left hemisphere
320.5
2246
Female, age 85, both hemispheres
278.1
2528
Male, age 74, both hemispheres
241.5
Entorhinal gyrus nTPM: 230.9
2613
Female, age 94, left hemisphere
262.7
1938
Female, age 85, left hemisphere
240.1
1787
Male, age 76, left hemisphere
233.1
2117
Female, age 91, right hemisphere
231.6
2764
Male, age 80, right hemisphere
218.1
2686
Male, age 75, right hemisphere
199.6
Hippocampus, CA1 nTPM: 351.2
2749
Male, age 80, left hemisphere
489.1
2045
Male, age 76, both hemispheres
374.0
1873
Female, age 85, both hemispheres
367.6
2527
Male, age 74, both hemispheres
304.3
2082
Female, age 91, right hemisphere
221.2
Hippocampus, CA2 nTPM: 310.0
1963
Male, age 80, left hemisphere
516.5
1892
Male, age 76, both hemispheres
380.1
2249
Male, age 74, both hemispheres
248.0
2437
Female, age 94, left hemisphere
248.0
2113
Female, age 91, right hemisphere
240.6
1940
Female, age 85, left hemisphere
226.9
Hippocampus, CA3 nTPM: 324.6
2137
Male, age 80, left hemisphere
451.9
2861
Female, age 67, both hemispheres
415.0
2620
Female, age 94, left hemisphere
336.6
1867
Male, age 76, both hemispheres
289.0
1891
Female, age 85, both hemispheres
247.0
2436
Male, age 74, both hemispheres
207.8
Parahippocampal cortex nTPM: 210.4
2245
Female, age 91, both hemispheres
276.8
2018
Male, age 76, both hemispheres
234.2
1933
Female, age 85, both hemispheres
220.3
2532
Female, age 72, left hemisphere
215.3
2622
Female, age 67, right hemisphere
212.0
2250
Female, age 67, right hemisphere
206.6
2692
Male, age 74, both hemispheres
202.2
1990
Female, age 91, right hemisphere
188.4
2693
Female, age 94, both hemispheres
177.6
1850
Male, age 80, both hemispheres
170.3
Perirhinal gyrus nTPM: 192.2
2521
Female, age 94, right hemisphere
218.3
1847
Female, age 91, left hemisphere
200.0
1841
Female, age 85, right hemisphere
188.8
2848
Male, age 76, right hemisphere
180.5
1794
Male, age 80, right hemisphere
173.5
Subiculum nTPM: 243.1
2042
Male, age 76, both hemispheres
321.6
1901
Male, age 80, both hemispheres
278.2
1977
Female, age 85, both hemispheres
244.4
2729
Female, age 91, right hemisphere
212.8
2438
Female, age 94, left hemisphere
212.5
2619
Male, age 74, both hemispheres
188.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
182.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 182.1
Samples: 197
Max nTPM: 546.0
Min nTPM: 15.5
Std nTPM: 69.3
Median nTPM: 170.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
546.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
399.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
394.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
350.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
328.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
323.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
314.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
308.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
306.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
301.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
299.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
293.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
291.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
289.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
280.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
278.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
278.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
278.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
277.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
277.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
272.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
272.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
271.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
271.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
265.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
262.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
260.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
260.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
257.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
257.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
257.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
255.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
254.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
254.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
252.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
251.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
249.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
246.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
246.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
243.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
234.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
230.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
228.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
226.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
225.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
223.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
223.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
218.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
218.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
217.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
214.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
211.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
209.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
209.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
209.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
209.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
208.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
207.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
204.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
204.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
199.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
198.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
197.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
196.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
195.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
191.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
191.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
191.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
191.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
191.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
190.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
190.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
190.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
189.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
188.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
187.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
185.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
185.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
184.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
184.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
184.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
182.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
182.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
182.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
181.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
181.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
181.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
179.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
178.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
178.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
178.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
177.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
177.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
176.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
174.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
172.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
172.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
171.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
170.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
169.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
168.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
168.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
168.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
167.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
167.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
166.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
166.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
166.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
165.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
163.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
162.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
162.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
161.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
161.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
161.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
159.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
159.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
156.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
155.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
155.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
154.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
154.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
152.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
152.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
151.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
150.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
150.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
150.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
150.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
148.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
148.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
147.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
146.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
146.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
146.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
143.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
143.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
142.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
140.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
140.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
140.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
139.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
139.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
136.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
135.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
133.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
131.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
131.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
130.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
130.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
130.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
130.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
129.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
128.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
128.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
128.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
127.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
127.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
126.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
125.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
125.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
124.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
121.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
119.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
117.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
116.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
116.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
114.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
114.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
114.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
112.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
111.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
111.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
109.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
109.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
109.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
109.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
107.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
107.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
107.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
105.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
102.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
102.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
98.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
96.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
95.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
94.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
94.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
93.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
89.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
88.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
87.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
80.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
78.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
74.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
64.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
15.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 86.1
Samples: 4
Max nTPM: 91.1
Min nTPM: 82.2
Sample A
Male
84.1
Sample B
Male
82.2
Sample C
Female
86.8
Sample D
Female
91.1
Hippocampal formation nTPM: 100.3
Samples: 4
Max nTPM: 107.9
Min nTPM: 91.5
Sample A
Male
101.7
Sample B
Male
107.9
Sample C
Female
99.9
Sample D
Female
91.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.