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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
197.6
nTPM
FANTOM5:
161.3
Scaled Tags Per Million
Pig:
87.0
nTPM
Allen mouse:
2.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
197.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 194.3
2301
Female, age 85, both hemispheres
265.1
2188
Female, age 91, both hemispheres
201.7
2090
Male, age 80, both hemispheres
196.4
1984
Male, age 76, both hemispheres
114.0
Dorsal cochlear nucleus nTPM: 174.7
2187
Female, age 91, both hemispheres
219.2
2802
Male, age 74, right hemisphere
178.8
2370
Male, age 61, both hemispheres
172.3
2378
Male, age 80, both hemispheres
157.7
2058
Male, age 76, both hemispheres
145.6
Dorsal tegmental nucleus nTPM: 164.1
2083
Male, age 80, both hemispheres
200.2
2326
Male, age 74, both hemispheres
185.3
1936
Male, age 76, left hemisphere
147.4
2358
Male, age 61, both hemispheres
123.6
Dorsolateral tegmental area nTPM: 158.1
2751
Female, age 85, both hemispheres
209.2
2654
Male, age 80, both hemispheres
189.2
2337
Male, age 61, both hemispheres
161.2
2360
Male, age 74, both hemispheres
120.5
2141
Male, age 76, both hemispheres
110.3
Kolliker-Fuse nucleus nTPM: 155.0
2793
Female, age 91, left hemisphere
201.3
2163
Male, age 80, both hemispheres
160.6
2315
Male, age 76, right hemisphere
103.0
Lateral lemniscal nuclei nTPM: 148.7
2320
Female, age 91, left hemisphere
188.0
2746
Female, age 85, left hemisphere
154.7
2453
Male, age 74, right hemisphere
134.0
2036
Male, age 80, both hemispheres
133.9
2169
Male, age 76, both hemispheres
133.0
Lateral parabrachial nucleus nTPM: 156.3
2792
Male, age 76, both hemispheres
178.3
2790
Male, age 61, both hemispheres
172.5
2013
Male, age 80, both hemispheres
160.3
2139
Female, age 85, right hemisphere
114.1
Lateral vestibular nucleus nTPM: 190.7
2311
Male, age 80, both hemispheres
211.2
2184
Male, age 76, both hemispheres
170.2
Locus coeruleus nTPM: 104.9
2162
Male, age 80, both hemispheres
135.5
2720
Male, age 74, both hemispheres
131.2
2317
Female, age 72, unknown
106.0
2123
Female, age 91, both hemispheres
98.5
2014
Male, age 55, unknown
92.0
2788
Male, age 74, unknown
90.6
1980
Male, age 76, both hemispheres
80.9
Medial parabrachial nucleus nTPM: 197.6
2170
Female, age 91, both hemispheres
262.3
2463
Female, age 85, right hemisphere
202.0
2156
Male, age 61, both hemispheres
186.0
2786
Male, age 76, both hemispheres
176.7
2854
Male, age 80, both hemispheres
161.0
Medial periolivary nuclei nTPM: 145.9
2081
Male, age 80, both hemispheres
186.4
2458
Female, age 91, both hemispheres
170.4
2791
Male, age 74, right hemisphere
131.9
2063
Male, age 76, both hemispheres
128.9
2171
Female, age 85, both hemispheres
111.7
Motor facial nucleus nTPM: 147.6
2126
Male, age 61, both hemispheres
213.7
2795
Female, age 91, both hemispheres
144.3
2697
Female, age 85, both hemispheres
143.2
2365
Male, age 74, right hemisphere
140.0
2327
Male, age 80, both hemispheres
128.4
2062
Male, age 76, both hemispheres
115.9
Motor trigeminal nucleus nTPM: 178.2
2321
Female, age 91, both hemispheres
228.1
2560
Male, age 74, both hemispheres
185.8
2335
Male, age 61, both hemispheres
173.9
2309
Male, age 76, both hemispheres
171.5
2079
Male, age 80, both hemispheres
131.7
Nuclei of the trapezoid body nTPM: 133.4
2166
Male, age 80, both hemispheres
171.7
2368
Female, age 91, both hemispheres
159.1
2159
Male, age 61, both hemispheres
123.3
1983
Male, age 76, both hemispheres
114.8
2735
Female, age 85, both hemispheres
98.0
Nucleus raphe magnus nTPM: 128.8
2459
Female, age 91, both hemispheres
172.1
2051
Male, age 76, both hemispheres
161.5
2328
Male, age 80, both hemispheres
146.3
2455
Male, age 74, both hemispheres
124.0
2172
Female, age 85, both hemispheres
93.3
2160
Male, age 61, both hemispheres
75.9
Paramedian reticular nucleus nTPM: 147.5
2057
Male, age 80, both hemispheres
170.7
2052
Male, age 76, both hemispheres
150.5
2313
Male, age 61, both hemispheres
137.4
2050
Female, age 85, both hemispheres
131.4
Pedunculopontine tegmental nucleus nTPM: 145.8
2334
Male, age 80, both hemispheres
155.6
1921
Female, age 85, both hemispheres
144.4
2338
Male, age 61, both hemispheres
137.5
Pontine nuclei nTPM: 155.6
2319
Female, age 91, both hemispheres
202.5
2454
Male, age 74, left hemisphere
194.1
2115
Male, age 80, left hemisphere
171.4
2109
Female, age 72, unknown
165.3
1968
Male, age 76, left hemisphere
163.4
1863
Male, age 55, unknown
140.2
2787
Female, age 85, both hemispheres
116.2
2727
Male, age 61, right hemisphere
91.6
Pontine raphe nucleus nTPM: 123.3
2853
Male, age 76, midline
129.5
2122
Female, age 85, midline
117.0
Posteroventral cochlear nucleus nTPM: 180.4
2135
Female, age 91, both hemispheres
210.1
2341
Male, age 80, both hemispheres
189.3
2070
Male, age 76, both hemispheres
187.6
2371
Male, age 61, both hemispheres
183.1
2752
Female, age 85, both hemispheres
131.8
Principal sensory trigeminal nucleus nTPM: 143.0
2367
Female, age 91, left hemisphere
195.2
2324
Male, age 76, both hemispheres
153.6
2008
Male, age 80, left hemisphere
116.9
2158
Male, age 61, both hemispheres
106.3
Reticular pontine nucleus, caudal nTPM: 176.0
2559
Male, age 74, both hemispheres
234.2
2457
Female, age 91, both hemispheres
193.9
2092
Male, age 76, both hemispheres
144.6
2332
Male, age 80, right hemisphere
131.4
Reticular pontine nucleus, oral nTPM: 179.7
2361
Male, age 74, both hemispheres
200.8
2366
Female, age 91, both hemispheres
190.0
2167
Male, age 76, both hemispheres
188.2
1939
Male, age 80, both hemispheres
176.1
2012
Female, age 85, both hemispheres
143.4
Reticulotegmental nucleus nTPM: 163.5
2452
Male, age 74, both hemispheres
192.7
2322
Female, age 91, both hemispheres
191.6
2333
Male, age 80, both hemispheres
162.2
2325
Male, age 76, both hemispheres
107.3
Spinal trigeminal nucleus, oral nTPM: 164.5
1978
Male, age 76, both hemispheres
203.7
2164
Male, age 80, both hemispheres
170.6
2737
Female, age 85, both hemispheres
119.2
Subcoeruleus area nTPM: 168.8
2369
Female, age 85, left hemisphere
224.1
2451
Male, age 74, both hemispheres
179.1
2089
Male, age 76, left hemisphere
166.0
1958
Male, age 80, both hemispheres
139.6
2323
Female, age 91, left hemisphere
135.1
Superior olive nTPM: 150.2
2561
Female, age 91, both hemispheres
172.2
2329
Male, age 80, right hemisphere
166.5
2020
Male, age 76, both hemispheres
159.4
2364
Male, age 74, right hemisphere
143.3
1875
Female, age 85, both hemispheres
109.4
Ventral periolivary nuclei nTPM: 127.6
2023
Male, age 76, both hemispheres
138.0
2794
Female, age 91, left hemisphere
131.0
2165
Male, age 80, both hemispheres
130.7
2130
Female, age 85, both hemispheres
110.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 150.9
2456
Female, age 91, both hemispheres
183.2
2359
Male, age 61, both hemispheres
155.7
2161
Male, age 80, both hemispheres
153.7
1959
Male, age 76, both hemispheres
140.1
2840
Female, age 85, both hemispheres
138.5
2449
Male, age 74, both hemispheres
134.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.0
Pig sample
Sample description
nTPM
Pons nTPM: 87.0
Samples: 4
Max nTPM: 98.2
Min nTPM: 74.8
Sample A
Female
98.2
Sample B
Female
77.2
Sample C
Male
74.8
Sample D
Male
97.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
