MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.5 nTPM
HPA Brain:253.6 nTPM
GTEx:98.5 nTPM
FANTOM5:239.4 Scaled Tags Per Million
Pig:104.2 nTPM
Mouse:49.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 253.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.7
2586 Male, age 75, left hemisphere 317.4
1830 Male, age 51, unknown 229.8
2019 Male, age 18, unknown 211.0
2411 Female, age 72, unknown 206.2
1870 Female, age 42, unknown 195.5
1833 Male, age 53, unknown 193.7
2666 Male, age 74, left hemisphere 168.8
2828 Female, age 72, unknown 168.1
1827 Male, age 72, unknown 143.9
2219 Male, age 76, both hemispheres 122.8
Dorsal raphe nucleus
nTPM: 136.3
2750 Male, age 76, both hemispheres 230.0
1828 Male, age 53, unknown 129.9
2016 Female, age 72, unknown 123.8
2047 Male, age 72, unknown 113.8
2298 Female, age 72, unknown 84.3
Inferior colliculus
nTPM: 156.5
1890 Male, age 53, unknown 182.4
1848 Female, age 42, unknown 150.4
2097 Female, age 72, unknown 147.6
2849 Male, age 72, unknown 145.7
Median raphe nucleus
nTPM: 114.6
2220 Male, age 76, midline 114.6
Periaquaductal grey, anterior
nTPM: 156.0
2502 Female, age 75, unknown 173.1
1947 Male, age 18, unknown 157.2
1795 Male, age 51, unknown 137.6
Periaquaductal grey, dorsal
nTPM: 107.4
2464 Female, age 72, unknown 145.7
1831 Male, age 72, unknown 110.7
1840 Male, age 53, unknown 109.8
2850 Male, age 76, both hemispheres 63.6
Periaquaductal grey, lateral
nTPM: 114.2
2053 Male, age 18, unknown 150.8
2272 Male, age 74, both hemispheres 115.5
2140 Male, age 76, both hemispheres 76.4
Pretectal area
nTPM: 143.6
2407 Male, age 75, both hemispheres 203.8
2007 Male, age 72, unknown 176.3
1817 Female, age 42, unknown 173.0
1815 Male, age 53, unknown 164.9
2825 Male, age 18, unknown 159.1
2316 Male, age 76, right hemisphere 157.8
2667 Female, age 75, unknown 133.5
1944 Female, age 72, unknown 117.4
1816 Male, age 51, unknown 99.9
2273 Male, age 74, both hemispheres 97.3
2224 Female, age 72, unknown 96.2
Red nucleus
nTPM: 253.6
2584 Male, age 75, left hemisphere 317.4
1865 Male, age 51, unknown 287.9
2769 Male, age 72, unknown 279.5
2588 Male, age 74, left hemisphere 278.4
2227 Male, age 72, unknown 274.4
2823 Male, age 76, right hemisphere 269.3
1904 Male, age 53, unknown 267.4
1954 Female, age 42, unknown 228.8
2503 Female, age 72, unknown 228.2
1821 Female, age 72, unknown 225.8
2785 Male, age 18, unknown 224.5
2725 Female, age 75, unknown 161.9
Substantia nigra
nTPM: 146.5
2583 Male, age 75, right hemisphere 241.0
2590 Female, age 75, unknown 167.0
1851 Male, age 51, unknown 160.8
1889 Female, age 72, unknown 160.5
2409 Female, age 72, unknown 134.1
2665 Male, age 74, both hemispheres 126.0
1916 Female, age 42, unknown 123.4
1941 Male, age 53, unknown 120.9
2241 Male, age 72, unknown 117.5
2699 Male, age 18, unknown 113.6
Superior colliculus
nTPM: 171.6
2668 Female, age 75, unknown 208.6
2664 Male, age 75, both hemispheres 203.2
1913 Female, age 42, unknown 202.6
1995 Male, age 72, unknown 196.4
1839 Male, age 51, unknown 175.3
1895 Male, age 76, right hemisphere 165.8
2587 Male, age 74, left hemisphere 163.1
1796 Male, age 53, unknown 150.2
2261 Male, age 18, unknown 134.0
2087 Female, age 72, unknown 117.2
Ventral tegmental area
nTPM: 173.1
2223 Female, age 72, unknown 284.5
2410 Female, age 72, unknown 184.0
1942 Male, age 51, unknown 160.1
2218 Male, age 76, both hemispheres 151.4
2021 Male, age 53, unknown 135.6
1915 Female, age 42, unknown 122.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.5
Samples: 139

Max nTPM: 226.4
Min nTPM: 39.4
Std nTPM: 37.0
Median nTPM: 90.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 226.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 225.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 220.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 217.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 199.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 190.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 182.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 176.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 170.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 161.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 144.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 239.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 239.4
FF:10158-103A5 76 years, female 239.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.7
Samples: 4

Max nTPM: 128.6
Min nTPM: 57.9
Sample A Female 89.1
Sample B Female 57.9
Sample C Male 83.3
Sample D Male 128.6
Midbrain
nTPM: 104.2
Samples: 4

Max nTPM: 158.7
Min nTPM: 80.7
Sample A Female 158.7
Sample B Female 80.7
Sample C Male 87.8
Sample D Male 89.6
Periaqueductal gray
nTPM: 66.8
Samples: 3

Max nTPM: 70.7
Min nTPM: 63.9
Sample B Female 70.7
Sample C Male 63.9
Sample D Male 65.9
Superior colliculi
nTPM: 76.4
Samples: 4

Max nTPM: 102.3
Min nTPM: 36.8
Sample A Female 86.6
Sample B Female 36.8
Sample C Male 79.8
Sample D Male 102.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.8
Samples: 4

Max nTPM: 51.3
Min nTPM: 48.6
Sample A Male 48.6
Sample B Male 50.6
Sample C Female 51.3
Sample D Female 48.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
73818755 Antisense, RP_050921_01_G05, Mouse strain C57BL/6J (56 days, male) 2.5
71724822 Antisense, RP_050921_01_G05, Mouse strain C57BL/6J (56 days, male) 1.7

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