MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.3 nTPM
HPA Brain:79.5 nTPM
GTEx:58.3 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:38.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.5
2586 Male, age 75, left hemisphere 106.2
2828 Female, age 72, unknown 88.8
2019 Male, age 18, unknown 84.7
2411 Female, age 72, unknown 70.0
1830 Male, age 51, unknown 69.6
1870 Female, age 42, unknown 69.0
1833 Male, age 53, unknown 63.7
1827 Male, age 72, unknown 63.1
2666 Male, age 74, left hemisphere 59.5
2219 Male, age 76, both hemispheres 40.4
Dorsal raphe nucleus
nTPM: 61.2
1828 Male, age 53, unknown 68.6
2016 Female, age 72, unknown 65.9
2750 Male, age 76, both hemispheres 63.4
2047 Male, age 72, unknown 55.5
2298 Female, age 72, unknown 52.8
Inferior colliculus
nTPM: 53.8
1848 Female, age 42, unknown 61.4
2097 Female, age 72, unknown 52.2
2849 Male, age 72, unknown 51.0
1890 Male, age 53, unknown 50.7
Median raphe nucleus
nTPM: 49.5
2220 Male, age 76, midline 49.5
Periaquaductal grey, anterior
nTPM: 52.2
1947 Male, age 18, unknown 59.0
1795 Male, age 51, unknown 55.1
2502 Female, age 75, unknown 42.4
Periaquaductal grey, dorsal
nTPM: 52.3
1831 Male, age 72, unknown 56.3
2850 Male, age 76, both hemispheres 52.8
1840 Male, age 53, unknown 50.3
2464 Female, age 72, unknown 49.8
Periaquaductal grey, lateral
nTPM: 56.0
2053 Male, age 18, unknown 59.3
2272 Male, age 74, both hemispheres 56.8
2140 Male, age 76, both hemispheres 51.9
Pretectal area
nTPM: 67.0
2667 Female, age 75, unknown 80.7
1815 Male, age 53, unknown 80.4
2273 Male, age 74, both hemispheres 76.8
1817 Female, age 42, unknown 74.4
2007 Male, age 72, unknown 73.8
2316 Male, age 76, right hemisphere 65.7
1944 Female, age 72, unknown 64.5
2407 Male, age 75, both hemispheres 63.2
2825 Male, age 18, unknown 54.8
1816 Male, age 51, unknown 53.3
2224 Female, age 72, unknown 50.0
Red nucleus
nTPM: 79.5
2725 Female, age 75, unknown 101.3
1821 Female, age 72, unknown 95.1
1865 Male, age 51, unknown 91.9
1904 Male, age 53, unknown 82.9
2503 Female, age 72, unknown 79.9
2769 Male, age 72, unknown 78.1
2785 Male, age 18, unknown 77.7
2823 Male, age 76, right hemisphere 77.6
1954 Female, age 42, unknown 73.7
2227 Male, age 72, unknown 72.7
2588 Male, age 74, left hemisphere 66.5
2584 Male, age 75, left hemisphere 56.1
Substantia nigra
nTPM: 54.4
2583 Male, age 75, right hemisphere 63.9
1889 Female, age 72, unknown 63.8
1851 Male, age 51, unknown 62.9
1916 Female, age 42, unknown 60.3
2699 Male, age 18, unknown 54.4
2241 Male, age 72, unknown 52.5
1941 Male, age 53, unknown 49.5
2409 Female, age 72, unknown 48.7
2590 Female, age 75, unknown 46.0
2665 Male, age 74, both hemispheres 41.9
Superior colliculus
nTPM: 63.5
1995 Male, age 72, unknown 74.5
2664 Male, age 75, both hemispheres 74.3
1796 Male, age 53, unknown 65.9
1913 Female, age 42, unknown 65.0
2587 Male, age 74, left hemisphere 63.5
2087 Female, age 72, unknown 62.5
1839 Male, age 51, unknown 60.9
1895 Male, age 76, right hemisphere 59.1
2668 Female, age 75, unknown 57.1
2261 Male, age 18, unknown 51.7
Ventral tegmental area
nTPM: 60.8
2410 Female, age 72, unknown 73.9
2223 Female, age 72, unknown 68.0
1915 Female, age 42, unknown 64.5
1942 Male, age 51, unknown 53.1
2218 Male, age 76, both hemispheres 53.1
2021 Male, age 53, unknown 52.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.3
Samples: 139

Max nTPM: 159.2
Min nTPM: 25.6
Std nTPM: 18.8
Median nTPM: 54.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 159.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 153.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 96.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 94.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 93.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 93.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 90.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 87.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 87.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 85.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 84.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.4
FF:10158-103A5 76 years, female 117.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.6
Samples: 4

Max nTPM: 30.0
Min nTPM: 18.4
Sample A Female 30.0
Sample B Female 22.1
Sample C Male 18.4
Sample D Male 19.9
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 29.7
Min nTPM: 17.6
Sample A Female 29.7
Sample B Female 20.0
Sample C Male 17.9
Sample D Male 17.6
Periaqueductal gray
nTPM: 19.5
Samples: 3

Max nTPM: 23.1
Min nTPM: 17.4
Sample B Female 23.1
Sample C Male 18.0
Sample D Male 17.4
Superior colliculi
nTPM: 22.8
Samples: 4

Max nTPM: 27.0
Min nTPM: 18.6
Sample A Female 27.0
Sample B Female 26.4
Sample C Male 19.0
Sample D Male 18.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 41.3
Min nTPM: 36.2
Sample A Male 38.0
Sample B Male 39.1
Sample C Female 36.2
Sample D Female 41.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68269060 Antisense, RP_041208_01_G11, Mouse strain C57BL/6J (56 days, male) 0.6

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