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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPI is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
96.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
415.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
415.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
397.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
342.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
332.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
311.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
306.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
297.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
293.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
286.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
270.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
259.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
258.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
246.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
245.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
243.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
240.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
238.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
233.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
232.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
223.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
219.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
213.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
212.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
203.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
198.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
198.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
197.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
193.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
189.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
186.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
186.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
184.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
183.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
183.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
177.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
176.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
168.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
165.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
165.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
165.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
164.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
162.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
162.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
161.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
161.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
160.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
160.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
159.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
159.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
158.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
157.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
157.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
156.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
154.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
153.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
153.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
153.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
153.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
152.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
150.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
150.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
146.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
146.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
145.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
145.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
145.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
142.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
141.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
138.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
138.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
134.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
134.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
134.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
134.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
133.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
132.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
132.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
132.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
132.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
131.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
129.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
129.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
129.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
128.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
126.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
126.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
125.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
124.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
123.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
123.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
122.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
122.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
122.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
121.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
121.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
121.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
120.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
120.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
120.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
120.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
119.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
119.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
119.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
119.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
118.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
118.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
117.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
116.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
116.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
116.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
115.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
114.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
114.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
112.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
111.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
111.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
110.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
109.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
109.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
109.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
108.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
108.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
107.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
107.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
107.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
105.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
105.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
105.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
103.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
103.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
102.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
102.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
102.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
102.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
102.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
101.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
101.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
100.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
98.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
97.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
97.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
95.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
95.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
95.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
95.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
94.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
94.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
93.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
92.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
92.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
91.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
90.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
89.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
88.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
88.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
88.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
87.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
87.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
87.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
87.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
85.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
85.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
85.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
84.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
84.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
82.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
81.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
81.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
80.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
80.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
80.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
80.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
79.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
79.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
79.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
78.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
78.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
77.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
77.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
77.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
77.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
76.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
76.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
75.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
75.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
74.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
73.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
73.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
73.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
72.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
72.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
71.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
70.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
70.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
70.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
70.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
70.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
69.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
68.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
68.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
68.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
68.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
67.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
67.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
67.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
67.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
66.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
66.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
66.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
65.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
64.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
64.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
63.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
63.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
62.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
62.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
62.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
61.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
61.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
61.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
60.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
60.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
60.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
59.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
59.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
59.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
59.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
59.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
59.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
58.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
58.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
58.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
57.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
57.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
57.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
56.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
56.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
56.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
56.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
55.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
55.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
55.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
55.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
54.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
54.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
54.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
54.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
54.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
53.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
53.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
50.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
50.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
50.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
49.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
49.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
48.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
48.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
48.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
44.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
44.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
44.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
44.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
43.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
42.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
40.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
39.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
39.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
32.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPI is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.0
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
491.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
365.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
278.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
230.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
225.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
202.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
186.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
162.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
161.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
155.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
147.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
145.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
141.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
140.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
138.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
137.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
136.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
134.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
126.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
125.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
124.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
123.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
123.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
122.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
120.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
120.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
119.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
118.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
117.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
117.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
117.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
115.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
115.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
112.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
110.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
107.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
106.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
104.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
104.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
104.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
101.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
100.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
100.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
99.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
99.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
97.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
93.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
93.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
88.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
88.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
87.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
87.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
87.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
87.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
87.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
86.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
86.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
86.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
84.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
83.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
83.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
82.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
82.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
81.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
81.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
80.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
80.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
79.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
78.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
78.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
78.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
78.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
75.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
75.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
74.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
74.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
73.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
73.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
73.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
72.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
72.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
72.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
71.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
71.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
71.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
70.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
70.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
70.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
70.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
70.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
69.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
69.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
69.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
69.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
67.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
67.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
65.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
65.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
65.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
65.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
65.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
64.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
64.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
64.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
64.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
64.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
63.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
62.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
62.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
62.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
62.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
62.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
61.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
61.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
61.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
61.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
61.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
61.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
60.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
60.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
60.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
59.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
59.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
58.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
58.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
58.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
57.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
57.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
55.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
55.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
55.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
53.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
53.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
51.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
51.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
51.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
49.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
48.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
48.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
48.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
47.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
46.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
46.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
46.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
45.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
44.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
44.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
43.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
43.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
42.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
42.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
42.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
39.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
36.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
257
Tumor
1.3
635
Tumor
1.2
393
Tumor
1.1
615
Tumor
1.1
1027
Tumor
1.1
745
Tumor
1.1
695
Tumor
1.0
327
Tumor
0.9
125
Tumor
0.8
425
Tumor
0.8
567
Tumor
0.8
466
Normal
0.8
172
Normal
0.8
443
Tumor
0.8
571
Tumor
0.7
777
Tumor
0.7
162
Normal
0.7
785
Tumor
0.7
627
Tumor
0.7
487
Tumor
0.7
392
Normal
0.6
361
Tumor
0.6
394
Normal
0.6
1043
Tumor
0.6
527
Tumor
0.6
414
Normal
0.6
863
Tumor
0.5
523
Tumor
0.5
573
Tumor
0.5
461
Tumor
0.5
756
Normal
0.5
858
Normal
0.4
222
Normal
0.4
515
Tumor
0.4
912
Normal
0.4
648
Normal
0.4
436
Normal
0.4
341
Tumor
0.4
481
Tumor
0.4
738
Normal
0.4
353
Tumor
0.4
462
Normal
0.4
342
Normal
0.4
421
Tumor
0.4
813
Tumor
0.3
432
Normal
0.3
882
Normal
0.3
386
Normal
0.3
1026
Normal
0.3
755
Tumor
0.3
376
Normal
0.3
664
Normal
0.3
786
Normal
0.3
298
Normal
0.3
513
Tumor
0.3
982
Normal
0.3
714
Normal
0.3
227
Tumor
0.3
424
Normal
0.2
455
Tumor
0.2
445
Tumor
0.2
537
Tumor
0.2
451
Tumor
0.2
138
Normal
0.2
452
Normal
0.2
358
Normal
0.2
428
Normal
0.2
387
Tumor
0.2
464
Normal
0.2
446
Normal
0.2
564
Normal
0.2
824
Normal
0.2
723
Tumor
0.2
1021
Tumor
0.2
456
Normal
0.2
375
Tumor
0.2
416
Normal
0.2
214
Normal
0.2
818
Normal
0.2
186
Normal
0.2
218
Normal
0.2
722
Normal
0.2
196
Normal
0.2
422
Normal
0.2
666
Normal
0.2
426
Normal
0.2
314
Normal
0.2
1022
Normal
0.2
728
Normal
0.2
357
Tumor
0.2
472
Normal
0.2
978
Normal
0.2
136
Normal
0.2
111
Normal
0.2
286
Normal
0.2
258
Normal
0.2
313
Tumor
0.2
328
Normal
0.2
365
Tumor
0.2
484
Normal
0.2
746
Normal
0.1
278
Normal
0.1
864
Normal
0.1
921
Tumor
0.1
628
Normal
0.1
862
Normal
0.1
312
Normal
0.1
1045
Tumor
0.1
463
Tumor
0.1
922
Normal
0.1
1032
Normal
0.1
195
Tumor
0.1
952
Normal
0.1
816
Normal
0.1
141
Tumor
0.1
642
Normal
0.1
228
Normal
0.1
232
Normal
0.1
188
Normal
0.1
868
Normal
0.1
148
Normal
0.1
662
Normal
0.1
518
Normal
0.1
344
Normal
0.1
191
Tumor
0.1
354
Normal
0.1
574
Normal
0.1
137
Tumor
0.1
618
Normal
0.1
923
Tumor
0.1
852
Normal
0.1
778
Normal
0.1
616
Normal
0.1
114
Normal
0.1
482
Normal
0.1
433
Tumor
0.1
873
Tumor
0.1
126
Normal
0.1
1044
Normal
0.0
468
Normal
0.0
1042
Normal
0.0
636
Normal
0.0
368
Normal
0.0
874
Normal
0.0
388
Normal
0.0
953
Tumor
0.0
955
Tumor
0.0
366
Normal
0.0
364
Normal
0.0
284
Normal
0.0
272
Normal
0.0
223
Tumor
0.0
146
Normal
0.0
514
Normal
0.0
1014
Normal
0.0
488
Normal
0.0
128
Normal
0.0
713
Tumor
0.0
563
Tumor
0.0
968
Normal
0.0
423
Tumor
0.0
967
Tumor
0.0
448
Normal
0.0
516
Normal
0.0
213
Tumor
0.0
698
Normal
0.0
617
Tumor
0.0
132
Normal
0.0
528
Normal
0.0
332
Normal
0.0
297
Tumor
0.0
742
Normal
0.0
147
Tumor
0.0
716
Normal
0.0
396
Normal
0.0
956
Normal
0.0
356
Normal
0.0
124
Normal
0.0
362
Normal
0.0
938
Normal
0.0
558
Normal
0.0
262
Normal
0.0
1016
Normal
0.0
285
Tumor
0.0
737
Tumor
-0.1
568
Normal
-0.1
924
Normal
-0.1
268
Normal
-0.1
231
Tumor
-0.1
474
Normal
-0.1
958
Normal
-0.1
721
Tumor
-0.1
866
Normal
-0.1
192
Normal
-0.1
534
Normal
-0.1
913
Tumor
-0.1
944
Normal
-0.1
427
Tumor
-0.1
412
Normal
-0.1
976
Normal
-0.1
224
Normal
-0.1
343
Tumor
-0.1
217
Tumor
-0.1
814
Normal
-0.1
884
Normal
-0.1
135
Tumor
-0.1
696
Normal
-0.1
142
Normal
-0.1
352
Normal
-0.1
395
Tumor
-0.1
434
Normal
-0.1
444
Normal
-0.1
964
Normal
-0.1
517
Tumor
-0.1
1013
Tumor
-0.1
572
Normal
-0.1
212
Normal
-0.1
851
Tumor
-0.1
391
Tumor
-0.1
465
Tumor
-0.1
966
Normal
-0.1
494
Normal
-0.1
744
Normal
-0.1
916
Normal
-0.1
171
Tumor
-0.2
926
Normal
-0.2
185
Tumor
-0.2
672
Normal
-0.2
686
Normal
-0.2
483
Tumor
-0.2
145
Tumor
-0.2
271
Tumor
-0.2
546
Normal
-0.2
685
Tumor
-0.2
914
Normal
-0.2
1046
Normal
-0.2
697
Tumor
-0.2
113
Tumor
-0.2
187
Tumor
-0.2
431
Tumor
-0.2
954
Normal
-0.2
957
Tumor
-0.2
1028
Normal
-0.2
435
Tumor
-0.2
384
Normal
-0.2
984
Normal
-0.2
878
Normal
-0.2
112
Tumor
-0.2
661
Tumor
-0.2
161
Tumor
-0.2
526
Normal
-0.2
981
Tumor
-0.2
918
Normal
-0.2
647
Tumor
-0.2
311
Tumor
-0.3
277
Tumor
-0.3
663
Tumor
-0.3
857
Tumor
-0.3
261
Tumor
-0.3
553
Tumor
-0.3
221
Tumor
-0.3
883
Tumor
-0.3
267
Tumor
-0.3
478
Normal
-0.3
467
Tumor
-0.3
127
Tumor
-0.3
477
Tumor
-0.3
524
Normal
-0.3
533
Tumor
-0.3
671
Tumor
-0.3
1025
Tumor
-0.4
498
Normal
-0.4
665
Tumor
-0.4
554
Normal
-0.4
865
Tumor
-0.4
497
Tumor
-0.4
411
Tumor
-0.4
915
Tumor
-0.4
557
Tumor
-0.4
881
Tumor
-0.4
385
Tumor
-0.4
538
Normal
-0.4
743
Tumor
-0.4
917
Tumor
-0.4
447
Tumor
-0.4
536
Normal
-0.5
641
Tumor
-0.5
123
Tumor
-0.5
492
Normal
-0.5
355
Tumor
-0.5
741
Tumor
-0.5
823
Tumor
-0.5
963
Tumor
-0.5
367
Tumor
-0.5
975
Tumor
-0.5
491
Tumor
-0.6
525
Tumor
-0.6
815
Tumor
-0.6
351
Tumor
-0.6
1031
Tumor
-0.6
493
Tumor
-0.6
131
Tumor
-0.6
911
Tumor
-0.6
983
Tumor
-0.6
977
Tumor
-0.6
331
Tumor
-0.6
383
Tumor
-0.6
727
Tumor
-0.6
951
Tumor
-0.6
937
Tumor
-0.7
471
Tumor
-0.7
415
Tumor
-0.7
877
Tumor
-0.7
925
Tumor
-0.7
943
Tumor
-0.7
1041
Tumor
-0.8
283
Tumor
-0.8
724
Normal
-0.8
545
Tumor
-0.8
867
Tumor
-0.8
861
Tumor
-0.8
363
Tumor
-0.8
715
Tumor
-0.8
817
Tumor
-0.9
211
Tumor
-0.9
413
Tumor
-0.9
1015
Tumor
-1.0
965
Tumor
-1.1
473
Tumor
-1.2
535
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.