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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
494.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5565.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3337.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2921.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2887.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2628.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2361.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2150.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1828.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1811.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1779.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1771.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1751.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1699.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1690.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1624.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1612.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1598.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1583.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1540.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1532.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1497.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1442.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1431.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1411.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1403.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1402.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1393.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1375.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1366.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1336.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1307.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1233.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1219.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1217.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1192.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1182.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1168.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1159.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1140.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1107.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1099.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1082.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1056.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1056.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1050.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1042.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1037.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1036.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1026.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1024.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1023.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1011.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
998.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
982.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
974.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
961.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
954.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
952.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
942.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
941.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
931.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
922.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
921.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
918.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
908.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
899.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
892.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
874.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
874.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
867.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
866.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
860.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
859.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
846.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
845.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
839.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
822.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
821.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
820.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
817.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
815.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
810.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
784.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
780.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
776.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
773.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
763.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
761.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
741.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
729.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
727.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
719.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
703.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
701.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
683.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
682.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
675.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
672.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
659.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
655.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
653.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
643.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
642.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
631.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
613.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
611.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
607.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
603.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
596.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
596.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
590.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
588.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
579.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
578.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
577.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
552.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
545.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
545.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
542.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
534.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
533.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
531.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
529.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
525.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
513.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
501.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
501.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
497.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
497.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
496.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
491.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
485.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
477.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
475.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
475.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
473.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
472.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
468.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
466.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
462.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
461.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
455.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
454.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
446.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
443.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
435.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
429.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
424.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
423.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
419.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
416.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
411.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
408.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
402.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
393.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
393.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
389.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
389.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
389.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
388.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
386.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
384.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
384.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
381.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
379.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
372.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
372.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
359.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
359.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
350.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
350.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
343.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
342.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
340.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
330.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
330.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
328.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
323.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
319.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
316.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
309.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
306.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
300.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
296.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
292.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
291.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
287.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
280.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
278.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
277.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
277.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
273.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
265.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
260.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
258.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
252.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
252.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
248.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
246.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
244.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
243.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
232.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
227.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
224.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
221.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
217.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
215.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
212.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
211.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
207.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
206.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
203.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
194.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
190.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
183.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
182.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
182.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
182.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
176.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
176.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
174.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
174.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
172.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
172.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
170.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
168.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
166.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
164.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
164.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
163.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
161.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
159.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
159.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
158.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
156.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
154.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
153.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
146.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
143.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
142.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
141.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
140.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
135.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
133.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
132.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
129.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
128.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
125.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
124.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
123.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
120.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
119.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
118.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
116.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
115.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
113.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
112.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
111.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
104.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
102.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
97.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
96.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
95.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
91.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
88.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
87.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
86.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
81.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
81.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
81.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
79.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
78.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
75.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
75.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
74.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
72.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
72.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
72.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
71.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
69.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
68.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
68.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
68.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
65.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
62.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
61.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
59.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
58.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
56.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
55.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
55.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
55.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
53.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
52.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
51.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
51.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
50.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
49.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
44.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
39.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
524.0
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5418.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5350.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
3755.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
3374.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
3260.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2740.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2420.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
2250.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2222.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
2058.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
2029.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
1936.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
1853.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1770.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
1759.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
1611.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
1563.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
1494.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1476.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1455.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
1445.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1390.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
1359.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
1342.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
1270.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
1239.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
1186.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
1137.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1133.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
1124.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1059.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
1059.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
1034.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
1034.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1013.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1012.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
997.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
990.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
963.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
922.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
920.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
911.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
904.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
875.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
866.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
855.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
833.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
819.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
815.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
813.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
802.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
800.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
800.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
761.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
756.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
739.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
723.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
720.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
718.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
715.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
707.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
690.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
656.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
641.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
632.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
632.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
618.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
608.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
594.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
580.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
570.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
559.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
556.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
546.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
541.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
539.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
528.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
523.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
499.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
495.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
494.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
493.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
490.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
488.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
477.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
474.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
448.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
415.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
413.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
408.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
396.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
395.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
370.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
362.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
345.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
340.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
336.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
326.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
322.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
311.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
310.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
309.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
296.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
290.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
284.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
273.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
264.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
263.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
255.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
253.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
243.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
241.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
227.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
224.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
214.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
213.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
207.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
201.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
192.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
184.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
178.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
176.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
172.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
171.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
167.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
165.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
164.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
160.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
159.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
157.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
154.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
154.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
149.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
146.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
143.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
142.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
142.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
141.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
138.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
136.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
133.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
130.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
128.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
119.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
119.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
119.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
116.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
114.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
111.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
109.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
105.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
104.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
102.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
98.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
92.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
91.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
88.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
85.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
83.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
83.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
80.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
75.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
73.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
67.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
66.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
66.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
64.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
64.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
62.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
60.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
58.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
54.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
54.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
54.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
49.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
47.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
46.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
42.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
38.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
2.7
343
Tumor
2.0
311
Tumor
1.8
917
Tumor
1.8
671
Tumor
1.7
217
Tumor
1.7
813
Tumor
1.6
943
Tumor
1.6
455
Tumor
1.5
383
Tumor
1.4
713
Tumor
1.4
535
Tumor
1.4
223
Tumor
1.4
213
Tumor
1.3
975
Tumor
1.3
697
Tumor
1.2
817
Tumor
1.2
211
Tumor
1.2
355
Tumor
1.2
375
Tumor
1.2
881
Tumor
1.2
421
Tumor
1.1
617
Tumor
1.1
491
Tumor
1.1
814
Normal
1.1
545
Tumor
1.0
447
Tumor
1.0
187
Tumor
0.9
536
Normal
0.9
297
Tumor
0.9
983
Tumor
0.8
385
Tumor
0.8
135
Tumor
0.8
497
Tumor
0.8
141
Tumor
0.8
563
Tumor
0.8
395
Tumor
0.7
715
Tumor
0.7
331
Tumor
0.7
191
Tumor
0.7
185
Tumor
0.7
283
Tumor
0.6
365
Tumor
0.6
433
Tumor
0.5
823
Tumor
0.5
923
Tumor
0.5
483
Tumor
0.5
471
Tumor
0.4
137
Tumor
0.4
427
Tumor
0.4
883
Tumor
0.4
492
Normal
0.4
527
Tumor
0.4
367
Tumor
0.4
145
Tumor
0.4
963
Tumor
0.4
444
Normal
0.3
857
Tumor
0.3
195
Tumor
0.2
277
Tumor
0.2
861
Tumor
0.2
515
Tumor
0.2
161
Tumor
0.2
685
Tumor
0.2
525
Tumor
0.2
498
Normal
0.2
557
Tumor
0.2
863
Tumor
0.2
538
Normal
0.2
493
Tumor
0.2
391
Tumor
0.1
641
Tumor
0.1
745
Tumor
0.1
284
Normal
0.1
467
Tumor
0.1
921
Tumor
0.1
1045
Tumor
0.1
721
Tumor
0.1
672
Normal
0.1
384
Normal
0.0
224
Normal
0.0
913
Tumor
0.0
415
Tumor
0.0
463
Tumor
0.0
523
Tumor
0.0
361
Tumor
0.0
387
Tumor
0.0
528
Normal
0.0
546
Normal
-0.1
852
Normal
-0.1
364
Normal
-0.1
368
Normal
-0.1
517
Tumor
-0.1
332
Normal
-0.1
816
Normal
-0.1
366
Normal
-0.1
228
Normal
-0.1
286
Normal
-0.1
363
Tumor
-0.1
376
Normal
-0.2
722
Normal
-0.2
815
Tumor
-0.2
982
Normal
-0.2
413
Tumor
-0.2
416
Normal
-0.2
1015
Tumor
-0.2
851
Tumor
-0.2
354
Normal
-0.2
665
Tumor
-0.2
818
Normal
-0.2
686
Normal
-0.2
212
Normal
-0.2
696
Normal
-0.2
484
Normal
-0.2
125
Tumor
-0.2
858
Normal
-0.2
824
Normal
-0.2
342
Normal
-0.2
392
Normal
-0.2
192
Normal
-0.2
314
Normal
-0.2
925
Tumor
-0.2
488
Normal
-0.2
328
Normal
-0.2
344
Normal
-0.2
478
Normal
-0.3
268
Normal
-0.3
636
Normal
-0.3
422
Normal
-0.3
534
Normal
-0.3
341
Tumor
-0.3
524
Normal
-0.3
352
Normal
-0.3
494
Normal
-0.3
386
Normal
-0.3
916
Normal
-0.3
394
Normal
-0.3
388
Normal
-0.3
227
Tumor
-0.3
358
Normal
-0.3
1044
Normal
-0.3
434
Normal
-0.3
573
Tumor
-0.3
716
Normal
-0.3
1028
Normal
-0.3
396
Normal
-0.3
278
Normal
-0.3
312
Normal
-0.3
953
Tumor
-0.4
976
Normal
-0.4
146
Normal
-0.4
984
Normal
-0.4
951
Tumor
-0.4
353
Tumor
-0.4
362
Normal
-0.4
615
Tumor
-0.4
618
Normal
-0.4
425
Tumor
-0.4
661
Tumor
-0.4
327
Tumor
-0.4
785
Tumor
-0.4
298
Normal
-0.4
113
Tumor
-0.4
356
Normal
-0.4
443
Tumor
-0.4
616
Normal
-0.4
912
Normal
-0.4
526
Normal
-0.4
666
Normal
-0.4
142
Normal
-0.5
214
Normal
-0.5
1026
Normal
-0.5
412
Normal
-0.5
778
Normal
-0.5
756
Normal
-0.5
628
Normal
-0.5
313
Tumor
-0.5
513
Tumor
-0.5
642
Normal
-0.5
452
Normal
-0.5
445
Tumor
-0.5
514
Normal
-0.5
664
Normal
-0.5
978
Normal
-0.5
724
Normal
-0.5
695
Tumor
-0.5
448
Normal
-0.5
878
Normal
-0.5
516
Normal
-0.5
1025
Tumor
-0.5
914
Normal
-0.5
1043
Tumor
-0.5
714
Normal
-0.5
466
Normal
-0.5
188
Normal
-0.5
966
Normal
-0.5
1014
Normal
-0.5
627
Tumor
-0.5
468
Normal
-0.5
882
Normal
-0.5
1031
Tumor
-0.5
554
Normal
-0.5
285
Tumor
-0.5
662
Normal
-0.5
1016
Normal
-0.5
518
Normal
-0.5
635
Tumor
-0.6
393
Tumor
-0.6
487
Tumor
-0.6
957
Tumor
-0.6
558
Normal
-0.6
786
Normal
-0.6
884
Normal
-0.6
981
Tumor
-0.6
737
Tumor
-0.6
474
Normal
-0.6
431
Tumor
-0.6
186
Normal
-0.6
647
Tumor
-0.6
424
Normal
-0.6
138
Normal
-0.6
432
Normal
-0.6
755
Tumor
-0.7
124
Normal
-0.7
862
Normal
-0.7
446
Normal
-0.7
262
Normal
-0.7
537
Tumor
-0.7
465
Tumor
-0.7
148
Normal
-0.7
218
Normal
-0.7
456
Normal
-0.7
911
Tumor
-0.7
414
Normal
-0.7
351
Tumor
-0.7
865
Tumor
-0.7
648
Normal
-0.7
867
Tumor
-0.7
663
Tumor
-0.7
1013
Tumor
-0.7
426
Normal
-0.7
746
Normal
-0.7
477
Tumor
-0.7
126
Normal
-0.7
461
Tumor
-0.7
553
Tumor
-0.7
873
Tumor
-0.7
482
Normal
-0.7
428
Normal
-0.7
572
Normal
-0.7
147
Tumor
-0.8
162
Normal
-0.8
977
Tumor
-0.8
1032
Normal
-0.8
473
Tumor
-0.8
868
Normal
-0.8
196
Normal
-0.8
451
Tumor
-0.8
864
Normal
-0.8
222
Normal
-0.8
221
Tumor
-0.8
777
Tumor
-0.8
472
Normal
-0.8
464
Normal
-0.8
1042
Normal
-0.8
954
Normal
-0.8
574
Normal
-0.8
874
Normal
-0.8
952
Normal
-0.8
411
Tumor
-0.9
1046
Normal
-0.9
698
Normal
-0.9
564
Normal
-0.9
436
Normal
-0.9
956
Normal
-0.9
567
Tumor
-0.9
132
Normal
-0.9
968
Normal
-0.9
918
Normal
-0.9
172
Normal
-0.9
136
Normal
-1.0
866
Normal
-1.0
937
Tumor
-1.0
1041
Tumor
-1.0
958
Normal
-1.0
481
Tumor
-1.0
357
Tumor
-1.0
462
Normal
-1.0
171
Tumor
-1.0
743
Tumor
-1.0
922
Normal
-1.0
568
Normal
-1.0
924
Normal
-1.0
114
Normal
-1.1
423
Tumor
-1.1
1021
Tumor
-1.1
938
Normal
-1.1
964
Normal
-1.1
128
Normal
-1.1
1022
Normal
-1.1
111
Normal
-1.1
533
Tumor
-1.1
1027
Tumor
-1.1
131
Tumor
-1.1
965
Tumor
-1.2
267
Tumor
-1.2
926
Normal
-1.2
944
Normal
-1.2
232
Normal
-1.2
112
Tumor
-1.2
955
Tumor
-1.3
272
Normal
-1.3
127
Tumor
-1.3
967
Tumor
-1.3
915
Tumor
-1.3
261
Tumor
-1.3
571
Tumor
-1.4
723
Tumor
-1.5
258
Normal
-1.5
271
Tumor
-1.5
435
Tumor
-1.5
123
Tumor
-1.6
738
Normal
-1.6
744
Normal
-1.7
231
Tumor
-1.7
257
Tumor
-1.8
742
Normal
-1.9
741
Tumor
-2.0
728
Normal
-2.2
727
Tumor
-2.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.