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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
65.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
37.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.8
351
Tumor
1.1
473
Tumor
1.1
983
Tumor
1.1
463
Tumor
1.0
411
Tumor
1.0
391
Tumor
1.0
1013
Tumor
0.9
285
Tumor
0.9
815
Tumor
0.9
967
Tumor
0.8
112
Tumor
0.8
533
Tumor
0.8
211
Tumor
0.7
123
Tumor
0.7
641
Tumor
0.7
535
Tumor
0.7
357
Tumor
0.7
477
Tumor
0.6
331
Tumor
0.6
571
Tumor
0.6
1031
Tumor
0.6
727
Tumor
0.6
465
Tumor
0.6
671
Tumor
0.6
861
Tumor
0.6
185
Tumor
0.6
877
Tumor
0.5
951
Tumor
0.5
127
Tumor
0.5
943
Tumor
0.5
385
Tumor
0.5
661
Tumor
0.4
937
Tumor
0.4
1015
Tumor
0.4
865
Tumor
0.4
617
Tumor
0.4
715
Tumor
0.4
277
Tumor
0.4
443
Tumor
0.4
221
Tumor
0.4
487
Tumor
0.4
227
Tumor
0.4
724
Normal
0.4
817
Tumor
0.4
883
Tumor
0.4
647
Tumor
0.4
917
Tumor
0.3
963
Tumor
0.3
135
Tumor
0.3
434
Normal
0.3
965
Tumor
0.3
444
Normal
0.3
141
Tumor
0.3
261
Tumor
0.3
923
Tumor
0.3
498
Normal
0.2
433
Tumor
0.2
814
Normal
0.2
217
Tumor
0.2
873
Tumor
0.2
131
Tumor
0.2
954
Normal
0.2
355
Tumor
0.2
341
Tumor
0.2
267
Tumor
0.2
665
Tumor
0.2
161
Tumor
0.2
435
Tumor
0.2
537
Tumor
0.2
311
Tumor
0.2
268
Normal
0.2
387
Tumor
0.2
447
Tumor
0.2
262
Normal
0.2
413
Tumor
0.1
557
Tumor
0.1
367
Tumor
0.1
343
Tumor
0.1
977
Tumor
0.1
455
Tumor
0.1
271
Tumor
0.1
478
Normal
0.1
365
Tumor
0.1
363
Tumor
0.1
272
Normal
0.1
471
Tumor
0.1
492
Normal
0.1
213
Tumor
0.1
536
Normal
0.1
231
Tumor
0.1
125
Tumor
0.1
283
Tumor
0.1
921
Tumor
0.1
384
Normal
0.1
145
Tumor
0.1
366
Normal
0.1
188
Normal
0.1
368
Normal
0.0
445
Tumor
0.0
713
Tumor
0.0
755
Tumor
0.0
497
Tumor
0.0
553
Tumor
0.0
978
Normal
0.0
461
Tumor
0.0
126
Normal
0.0
383
Tumor
0.0
451
Tumor
0.0
976
Normal
0.0
313
Tumor
0.0
743
Tumor
0.0
146
Normal
0.0
1045
Tumor
0.0
257
Tumor
0.0
362
Normal
0.0
423
Tumor
0.0
258
Normal
0.0
913
Tumor
0.0
186
Normal
0.0
124
Normal
0.0
881
Tumor
0.0
721
Tumor
0.0
312
Normal
0.0
916
Normal
0.0
863
Tumor
0.0
137
Tumor
0.0
171
Tumor
0.0
744
Normal
0.0
662
Normal
0.0
635
Tumor
0.0
738
Normal
0.0
421
Tumor
0.0
1041
Tumor
0.0
375
Tumor
0.0
1025
Tumor
0.0
981
Tumor
0.0
376
Normal
0.0
813
Tumor
0.0
278
Normal
0.0
386
Normal
0.0
852
Normal
0.0
663
Tumor
-0.1
138
Normal
-0.1
563
Tumor
-0.1
297
Tumor
-0.1
966
Normal
-0.1
672
Normal
-0.1
914
Normal
-0.1
344
Normal
-0.1
538
Normal
-0.1
361
Tumor
-0.1
114
Normal
-0.1
342
Normal
-0.1
192
Normal
-0.1
142
Normal
-0.1
728
Normal
-0.1
352
Normal
-0.1
666
Normal
-0.1
525
Tumor
-0.1
491
Tumor
-0.1
1043
Tumor
-0.1
395
Tumor
-0.1
737
Tumor
-0.1
113
Tumor
-0.1
332
Normal
-0.1
517
Tumor
-0.1
574
Normal
-0.1
686
Normal
-0.1
388
Normal
-0.1
984
Normal
-0.1
284
Normal
-0.1
956
Normal
-0.1
1042
Normal
-0.1
432
Normal
-0.1
685
Tumor
-0.1
975
Tumor
-0.1
1016
Normal
-0.1
823
Tumor
-0.1
467
Tumor
-0.1
353
Tumor
-0.1
232
Normal
-0.1
468
Normal
-0.1
431
Tumor
-0.1
136
Normal
-0.1
564
Normal
-0.1
493
Tumor
-0.2
924
Normal
-0.2
187
Tumor
-0.2
446
Normal
-0.2
111
Normal
-0.2
785
Tumor
-0.2
224
Normal
-0.2
922
Normal
-0.2
756
Normal
-0.2
524
Normal
-0.2
228
Normal
-0.2
128
Normal
-0.2
857
Tumor
-0.2
722
Normal
-0.2
162
Normal
-0.2
926
Normal
-0.2
716
Normal
-0.2
958
Normal
-0.2
212
Normal
-0.2
223
Tumor
-0.2
464
Normal
-0.2
354
Normal
-0.2
526
Normal
-0.2
392
Normal
-0.2
648
Normal
-0.2
628
Normal
-0.2
314
Normal
-0.2
358
Normal
-0.2
286
Normal
-0.2
851
Tumor
-0.2
528
Normal
-0.2
568
Normal
-0.2
874
Normal
-0.2
516
Normal
-0.2
148
Normal
-0.2
416
Normal
-0.2
214
Normal
-0.2
697
Tumor
-0.2
558
Normal
-0.2
396
Normal
-0.2
456
Normal
-0.2
1032
Normal
-0.2
664
Normal
-0.2
488
Normal
-0.2
218
Normal
-0.2
642
Normal
-0.2
436
Normal
-0.2
964
Normal
-0.2
741
Tumor
-0.2
394
Normal
-0.2
615
Tumor
-0.2
1044
Normal
-0.2
818
Normal
-0.2
172
Normal
-0.2
494
Normal
-0.2
1021
Tumor
-0.2
878
Normal
-0.2
483
Tumor
-0.2
195
Tumor
-0.3
448
Normal
-0.3
918
Normal
-0.3
858
Normal
-0.3
968
Normal
-0.3
545
Tumor
-0.3
982
Normal
-0.3
778
Normal
-0.3
698
Normal
-0.3
427
Tumor
-0.3
1014
Normal
-0.3
925
Tumor
-0.3
422
Normal
-0.3
938
Normal
-0.3
957
Tumor
-0.3
572
Normal
-0.3
452
Normal
-0.3
627
Tumor
-0.3
636
Normal
-0.3
912
Normal
-0.3
616
Normal
-0.3
196
Normal
-0.3
222
Normal
-0.3
742
Normal
-0.3
132
Normal
-0.3
1028
Normal
-0.3
513
Tumor
-0.3
514
Normal
-0.3
944
Normal
-0.3
864
Normal
-0.3
298
Normal
-0.3
573
Tumor
-0.3
786
Normal
-0.3
1046
Normal
-0.3
696
Normal
-0.3
618
Normal
-0.3
746
Normal
-0.3
474
Normal
-0.3
364
Normal
-0.3
534
Normal
-0.3
952
Normal
-0.3
428
Normal
-0.3
953
Tumor
-0.4
191
Tumor
-0.4
567
Tumor
-0.4
824
Normal
-0.4
862
Normal
-0.4
1022
Normal
-0.4
714
Normal
-0.4
356
Normal
-0.4
515
Tumor
-0.4
868
Normal
-0.4
415
Tumor
-0.4
328
Normal
-0.4
723
Tumor
-0.4
424
Normal
-0.4
816
Normal
-0.4
518
Normal
-0.4
546
Normal
-0.4
425
Tumor
-0.4
554
Normal
-0.4
882
Normal
-0.4
393
Tumor
-0.4
745
Tumor
-0.4
866
Normal
-0.4
884
Normal
-0.4
915
Tumor
-0.4
472
Normal
-0.4
147
Tumor
-0.4
327
Tumor
-0.4
466
Normal
-0.4
777
Tumor
-0.5
412
Normal
-0.5
867
Tumor
-0.5
482
Normal
-0.5
1026
Normal
-0.5
955
Tumor
-0.5
462
Normal
-0.6
414
Normal
-0.6
484
Normal
-0.6
426
Normal
-0.6
911
Tumor
-0.7
523
Tumor
-0.8
527
Tumor
-0.9
1027
Tumor
-0.9
481
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
