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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYL9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
86.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11829.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
408.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
307.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
265.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
259.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
227.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
219.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
211.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
208.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
207.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
197.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
194.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
194.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
191.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
180.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
172.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
170.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
163.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
160.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
154.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
150.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
148.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
147.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
147.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
143.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
141.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
138.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
136.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
136.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
135.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
134.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
128.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
125.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
123.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
120.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
120.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
118.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
115.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
113.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
112.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
111.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
110.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
109.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
107.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
106.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
105.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
104.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
104.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
103.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
102.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
101.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
99.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
97.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
97.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
95.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
94.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
92.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
92.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
91.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
91.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
90.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
90.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
89.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
89.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
89.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
87.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
87.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
86.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
85.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
81.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
81.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
80.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
80.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
79.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
79.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
78.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
77.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
76.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
74.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
74.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
73.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
73.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
73.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
73.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
71.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
71.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
70.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
70.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
70.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
69.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
69.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
69.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
69.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
68.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
68.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
68.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
68.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
67.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
67.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
66.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
62.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
60.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
60.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
60.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
60.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
59.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
59.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
59.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
58.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
58.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
58.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
57.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
57.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
57.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
56.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
56.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
56.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
54.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
54.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
54.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
53.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
53.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
53.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
53.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
51.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
50.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
50.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
50.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
49.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
48.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
48.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
48.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
48.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
47.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
44.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
44.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
44.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
44.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
43.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
40.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
38.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
37.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
36.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
34.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
32.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYL9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
70.2
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
656.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
532.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
479.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
406.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
364.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
348.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
335.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
322.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
311.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
309.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
306.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
262.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
259.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
228.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
226.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
201.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
191.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
188.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
178.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
177.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
172.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
172.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
169.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
168.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
157.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
156.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
155.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
145.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
143.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
143.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
142.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
137.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
135.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
131.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
130.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
127.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
126.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
124.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
122.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
119.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
115.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
114.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
113.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
112.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
111.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
111.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
110.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
105.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
99.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
97.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
96.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
93.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
91.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
90.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
86.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
86.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
85.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
81.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
80.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
77.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
76.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
69.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
69.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
69.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
68.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
68.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
68.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
68.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
67.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
66.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
66.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
66.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
65.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
63.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
63.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
62.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
61.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
60.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
59.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
59.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
57.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
55.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
53.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
52.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
51.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
47.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
47.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
47.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
46.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
46.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
45.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
44.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
41.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
0.8
311
Tumor
0.7
185
Tumor
0.6
536
Normal
0.6
498
Normal
0.6
916
Normal
0.6
917
Tumor
0.5
223
Tumor
0.5
421
Tumor
0.5
958
Normal
0.5
455
Tumor
0.5
444
Normal
0.5
563
Tumor
0.5
572
Normal
0.5
478
Normal
0.5
852
Normal
0.5
124
Normal
0.5
975
Tumor
0.4
1045
Tumor
0.4
268
Normal
0.4
817
Tumor
0.4
447
Tumor
0.4
672
Normal
0.4
297
Tumor
0.4
982
Normal
0.4
126
Normal
0.3
224
Normal
0.3
538
Normal
0.3
943
Tumor
0.3
881
Tumor
0.3
823
Tumor
0.3
386
Normal
0.3
137
Tumor
0.3
188
Normal
0.3
448
Normal
0.3
445
Tumor
0.3
883
Tumor
0.3
384
Normal
0.3
545
Tumor
0.3
331
Tumor
0.3
976
Normal
0.3
715
Tumor
0.3
814
Normal
0.3
375
Tumor
0.3
412
Normal
0.3
924
Normal
0.2
1028
Normal
0.2
716
Normal
0.2
785
Tumor
0.2
816
Normal
0.2
344
Normal
0.2
214
Normal
0.2
364
Normal
0.2
284
Normal
0.2
434
Normal
0.2
1044
Normal
0.2
813
Tumor
0.2
671
Tumor
0.2
461
Tumor
0.2
968
Normal
0.2
627
Tumor
0.2
857
Tumor
0.2
516
Normal
0.2
416
Normal
0.2
984
Normal
0.2
354
Normal
0.2
212
Normal
0.2
878
Normal
0.2
327
Tumor
0.2
528
Normal
0.2
195
Tumor
0.2
884
Normal
0.2
874
Normal
0.2
778
Normal
0.2
686
Normal
0.1
415
Tumor
0.1
685
Tumor
0.1
721
Tumor
0.1
1032
Normal
0.1
777
Tumor
0.1
866
Normal
0.1
146
Normal
0.1
138
Normal
0.1
978
Normal
0.1
341
Tumor
0.1
332
Normal
0.1
514
Normal
0.1
187
Tumor
0.1
913
Tumor
0.1
921
Tumor
0.1
213
Tumor
0.1
666
Normal
0.1
427
Tumor
0.1
642
Normal
0.1
954
Normal
0.1
574
Normal
0.1
786
Normal
0.1
314
Normal
0.1
492
Normal
0.1
312
Normal
0.1
558
Normal
0.1
394
Normal
0.1
368
Normal
0.1
228
Normal
0.1
882
Normal
0.1
443
Tumor
0.1
922
Normal
0.1
868
Normal
0.1
863
Tumor
0.1
635
Tumor
0.1
383
Tumor
0.1
723
Tumor
0.1
744
Normal
0.1
218
Normal
0.1
277
Tumor
0.1
641
Tumor
0.1
433
Tumor
0.1
388
Normal
0.1
698
Normal
0.0
141
Tumor
0.0
142
Normal
0.0
365
Tumor
0.0
818
Normal
0.0
468
Normal
0.0
148
Normal
0.0
474
Normal
0.0
262
Normal
0.0
471
Tumor
0.0
952
Normal
0.0
738
Normal
0.0
145
Tumor
0.0
527
Tumor
0.0
362
Normal
0.0
524
Normal
0.0
356
Normal
0.0
395
Tumor
0.0
465
Tumor
0.0
1022
Normal
0.0
352
Normal
0.0
366
Normal
0.0
628
Normal
0.0
938
Normal
0.0
923
Tumor
0.0
636
Normal
0.0
328
Normal
0.0
515
Tumor
0.0
355
Tumor
0.0
696
Normal
0.0
867
Tumor
0.0
662
Normal
0.0
423
Tumor
0.0
1015
Tumor
0.0
111
Normal
0.0
357
Tumor
0.0
211
Tumor
0.0
956
Normal
0.0
136
Normal
0.0
298
Normal
0.0
422
Normal
0.0
272
Normal
0.0
343
Tumor
0.0
278
Normal
0.0
722
Normal
0.0
727
Tumor
0.0
488
Normal
0.0
396
Normal
0.0
918
Normal
0.0
363
Tumor
0.0
714
Normal
0.0
456
Normal
0.0
392
Normal
0.0
746
Normal
0.0
713
Tumor
0.0
742
Normal
0.0
385
Tumor
-0.1
162
Normal
-0.1
912
Normal
-0.1
513
Tumor
-0.1
568
Normal
-0.1
172
Normal
-0.1
697
Tumor
-0.1
664
Normal
-0.1
191
Tumor
-0.1
472
Normal
-0.1
873
Tumor
-0.1
127
Tumor
-0.1
615
Tumor
-0.1
728
Normal
-0.1
462
Normal
-0.1
186
Normal
-0.1
196
Normal
-0.1
546
Normal
-0.1
966
Normal
-0.1
114
Normal
-0.1
342
Normal
-0.1
467
Tumor
-0.1
963
Tumor
-0.1
1042
Normal
-0.1
944
Normal
-0.1
147
Tumor
-0.1
135
Tumor
-0.1
112
Tumor
-0.1
964
Normal
-0.1
925
Tumor
-0.1
616
Normal
-0.1
464
Normal
-0.1
426
Normal
-0.1
283
Tumor
-0.1
914
Normal
-0.1
494
Normal
-0.1
376
Normal
-0.1
466
Normal
-0.1
222
Normal
-0.1
128
Normal
-0.1
756
Normal
-0.1
1021
Tumor
-0.1
977
Tumor
-0.1
232
Normal
-0.1
824
Normal
-0.1
737
Tumor
-0.1
864
Normal
-0.1
361
Tumor
-0.1
428
Normal
-0.1
745
Tumor
-0.1
1014
Normal
-0.1
286
Normal
-0.1
271
Tumor
-0.1
743
Tumor
-0.1
477
Tumor
-0.1
132
Normal
-0.1
231
Tumor
-0.1
221
Tumor
-0.1
493
Tumor
-0.1
862
Normal
-0.1
481
Tumor
-0.1
755
Tumor
-0.2
432
Normal
-0.2
414
Normal
-0.2
618
Normal
-0.2
526
Normal
-0.2
525
Tumor
-0.2
1027
Tumor
-0.2
858
Normal
-0.2
535
Tumor
-0.2
446
Normal
-0.2
1046
Normal
-0.2
424
Normal
-0.2
483
Tumor
-0.2
534
Normal
-0.2
452
Normal
-0.2
564
Normal
-0.2
981
Tumor
-0.2
413
Tumor
-0.2
161
Tumor
-0.2
518
Normal
-0.2
983
Tumor
-0.2
647
Tumor
-0.2
482
Normal
-0.2
926
Normal
-0.2
393
Tumor
-0.2
258
Normal
-0.2
171
Tumor
-0.2
967
Tumor
-0.2
353
Tumor
-0.2
217
Tumor
-0.2
955
Tumor
-0.2
1026
Normal
-0.3
261
Tumor
-0.3
695
Tumor
-0.3
553
Tumor
-0.3
911
Tumor
-0.3
648
Normal
-0.3
953
Tumor
-0.3
436
Normal
-0.3
617
Tumor
-0.3
425
Tumor
-0.3
358
Normal
-0.3
387
Tumor
-0.3
1016
Normal
-0.3
484
Normal
-0.3
257
Tumor
-0.3
567
Tumor
-0.3
113
Tumor
-0.3
451
Tumor
-0.3
851
Tumor
-0.3
313
Tumor
-0.3
554
Normal
-0.3
463
Tumor
-0.3
1031
Tumor
-0.4
951
Tumor
-0.4
665
Tumor
-0.4
557
Tumor
-0.4
497
Tumor
-0.4
865
Tumor
-0.4
937
Tumor
-0.4
491
Tumor
-0.4
861
Tumor
-0.4
724
Normal
-0.4
1043
Tumor
-0.4
517
Tumor
-0.4
815
Tumor
-0.4
1041
Tumor
-0.4
267
Tumor
-0.4
285
Tumor
-0.4
411
Tumor
-0.5
573
Tumor
-0.5
131
Tumor
-0.5
661
Tumor
-0.5
915
Tumor
-0.5
351
Tumor
-0.5
571
Tumor
-0.5
741
Tumor
-0.5
877
Tumor
-0.5
435
Tumor
-0.5
367
Tumor
-0.6
391
Tumor
-0.6
431
Tumor
-0.6
965
Tumor
-0.6
227
Tumor
-0.7
663
Tumor
-0.7
125
Tumor
-0.7
123
Tumor
-0.7
957
Tumor
-0.7
523
Tumor
-0.7
533
Tumor
-0.8
487
Tumor
-0.8
1013
Tumor
-0.8
1025
Tumor
-0.8
537
Tumor
-1.0
473
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
