MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.2 nTPM
HPA Brain:13.6 nTPM
GTEx:10.2 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:86.3 nTPM
Mouse:17.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200250nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.3
2586 Male, age 75, left hemisphere 13.9
2019 Male, age 18, unknown 13.5
2666 Male, age 74, left hemisphere 12.3
1870 Female, age 42, unknown 11.5
2411 Female, age 72, unknown 11.5
2828 Female, age 72, unknown 11.1
1830 Male, age 51, unknown 10.9
1833 Male, age 53, unknown 10.8
1827 Male, age 72, unknown 10.1
2219 Male, age 76, both hemispheres 6.9
Dorsal raphe nucleus
nTPM: 13.6
2016 Female, age 72, unknown 17.0
2298 Female, age 72, unknown 16.0
1828 Male, age 53, unknown 13.7
2047 Male, age 72, unknown 10.7
2750 Male, age 76, both hemispheres 10.3
Inferior colliculus
nTPM: 10.7
2097 Female, age 72, unknown 12.1
1890 Male, age 53, unknown 11.1
1848 Female, age 42, unknown 10.5
2849 Male, age 72, unknown 9.1
Median raphe nucleus
nTPM: 10.1
2220 Male, age 76, midline 10.1
Periaquaductal grey, anterior
nTPM: 11.5
1795 Male, age 51, unknown 12.0
2502 Female, age 75, unknown 11.9
1947 Male, age 18, unknown 10.7
Periaquaductal grey, dorsal
nTPM: 13.5
2850 Male, age 76, both hemispheres 15.3
1831 Male, age 72, unknown 13.7
1840 Male, age 53, unknown 13.0
2464 Female, age 72, unknown 12.0
Periaquaductal grey, lateral
nTPM: 12.7
2140 Male, age 76, both hemispheres 13.8
2272 Male, age 74, both hemispheres 12.5
2053 Male, age 18, unknown 11.6
Pretectal area
nTPM: 12.6
2224 Female, age 72, unknown 13.9
2273 Male, age 74, both hemispheres 13.8
2316 Male, age 76, right hemisphere 13.4
1944 Female, age 72, unknown 13.3
1817 Female, age 42, unknown 13.2
1815 Male, age 53, unknown 13.1
1816 Male, age 51, unknown 12.9
2007 Male, age 72, unknown 12.6
2407 Male, age 75, both hemispheres 12.0
2825 Male, age 18, unknown 10.6
2667 Female, age 75, unknown 10.4
Red nucleus
nTPM: 11.6
1954 Female, age 42, unknown 13.0
1904 Male, age 53, unknown 12.6
2785 Male, age 18, unknown 12.5
1821 Female, age 72, unknown 12.1
2584 Male, age 75, left hemisphere 11.9
2725 Female, age 75, unknown 11.9
2503 Female, age 72, unknown 11.8
1865 Male, age 51, unknown 11.7
2227 Male, age 72, unknown 11.6
2769 Male, age 72, unknown 11.1
2823 Male, age 76, right hemisphere 10.4
2588 Male, age 74, left hemisphere 8.5
Substantia nigra
nTPM: 12.9
2241 Male, age 72, unknown 16.3
2665 Male, age 74, both hemispheres 14.8
2590 Female, age 75, unknown 14.2
2583 Male, age 75, right hemisphere 14.0
2699 Male, age 18, unknown 13.4
1851 Male, age 51, unknown 11.8
1916 Female, age 42, unknown 11.6
1889 Female, age 72, unknown 11.2
2409 Female, age 72, unknown 11.2
1941 Male, age 53, unknown 10.5
Superior colliculus
nTPM: 12.1
1995 Male, age 72, unknown 15.3
1913 Female, age 42, unknown 13.0
2587 Male, age 74, left hemisphere 13.0
2664 Male, age 75, both hemispheres 12.8
2087 Female, age 72, unknown 12.7
2668 Female, age 75, unknown 12.2
2261 Male, age 18, unknown 12.0
1839 Male, age 51, unknown 11.4
1796 Male, age 53, unknown 10.8
1895 Male, age 76, right hemisphere 8.1
Ventral tegmental area
nTPM: 12.5
2021 Male, age 53, unknown 14.6
1942 Male, age 51, unknown 13.3
1915 Female, age 42, unknown 12.0
2218 Male, age 76, both hemispheres 12.0
2410 Female, age 72, unknown 11.6
2223 Female, age 72, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.2
GTEx sample id Sample description nTPM
7.69.711.62.817.2024681012141618202224
Brain - Substantia nigra
Average nTPM: 10.2
Samples: 183

Max nTPM: 24.3
Min nTPM: 2.8
Std nTPM: 3.5
Median nTPM: 9.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 24.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 20.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 19.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 19.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 18.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 18.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 18.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 17.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 17.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.3
Pig sample Sample description nTPM
80.789.995.589.4110.90102030405060708090100110
 		Substantia nigra
nTPM: 86.3
Samples: 4

Max nTPM: 110.9
Min nTPM: 54.4
Sample A Female 89.4
Sample B Female 90.4
Sample C Male 54.4
Sample D Male 110.9
51.264.796.046.0154.5020406080100120140
 		Midbrain
nTPM: 82.5
Samples: 4

Max nTPM: 154.5
Min nTPM: 46.0
Sample A Female 154.5
Sample B Female 76.5
Sample C Male 46.0
Sample D Male 52.9
70.474.375.766.577.1010203040506070
 		Periaqueductal gray
nTPM: 72.6
Samples: 3

Max nTPM: 77.1
Min nTPM: 66.5
Sample B Female 74.3
Sample C Male 66.5
Sample D Male 77.1
68.477.086.061.293.90102030405060708090
 		Superior colliculi
nTPM: 77.3
Samples: 4

Max nTPM: 93.9
Min nTPM: 61.2
Sample A Female 83.3
Sample B Female 93.9
Sample C Male 61.2
Sample D Male 70.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.4
Mouse sample Sample description nTPM
17.217.417.616.918.0024681012141618
 		Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 18.0
Min nTPM: 16.9
Sample A Male 18.0
Sample B Male 17.5
Sample C Female 16.9
Sample D Female 17.3

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