BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:9.1 nTPM
HPA Brain:10.8 nTPM
GTEx:9.1 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:57.3 nTPM
Mouse:24.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200250nCPM

CAUDATE - Antibody stainingi
Antibody HPA026980
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 10.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.3
1857 Female, age 85, left hemisphere 10.0
2846 Female, age 79, unknown 9.7
2481 Female, age 94, left hemisphere 9.4
1854 Male, age 80, left hemisphere 8.5
2290 Female, age 72, unknown 8.5
1781 Male, age 74, unknown 7.9
2289 Male, age 61, right hemisphere 6.3
2288 Male, age 75, left hemisphere 5.9
Globus pallidus, externus
nTPM: 10.8
2395 Male, age 75, both hemispheres 13.8
2772 Female, age 79, unknown 11.9
1996 Male, age 80, right hemisphere 11.6
2646 Male, age 61, right hemisphere 9.2
2567 Female, age 72, unknown 7.5
Globus pallidus, internus
nTPM: 10.3
2483 Female, age 94, right hemisphere 13.9
2037 Male, age 80, right hemisphere 11.8
1818 Male, age 74, unknown 10.3
2778 Female, age 91, both hemispheres 9.8
2111 Female, age 85, right hemisphere 9.5
2287 Male, age 75, right hemisphere 8.7
2566 Female, age 72, unknown 8.0
Nucleus accumbens
nTPM: 7.7
2732 Male, age 80, right hemisphere 10.2
2391 Female, age 94, left hemisphere 8.9
1806 Female, age 85, left hemisphere 8.4
2698 Female, age 72, unknown 7.5
1856 Female, age 91, right hemisphere 7.4
2286 Male, age 75, left hemisphere 7.0
1783 Male, age 74, unknown 6.6
2824 Male, age 61, right hemisphere 5.4
Nucleus basalis of Meynert
nTPM: 9.9
2393 Male, age 80, right hemisphere 10.3
2569 Male, age 61, both hemispheres 10.3
2484 Female, age 94, left hemisphere 9.7
2821 Male, age 75, both hemispheres 9.3
Nucleus of the diagonal band
nTPM: 7.1
1812 Female, age 91, both hemispheres 8.9
1979 Male, age 74, unknown 7.6
2775 Male, age 80, right hemisphere 6.7
2195 Female, age 85, both hemispheres 6.6
2029 Male, age 61, right hemisphere 5.7
Putamen
nTPM: 7.7
2482 Female, age 94, left hemisphere 9.9
2466 Female, age 79, unknown 8.4
1937 Female, age 91, right hemisphere 7.8
2489 Female, age 72, unknown 7.3
1829 Male, age 74, unknown 7.2
2647 Male, age 75, left hemisphere 7.0
1838 Male, age 80, right hemisphere 6.1
Septal nuclei
nTPM: 8.5
2199 Male, age 80, right hemisphere 11.7
2394 Male, age 61, left hemisphere 9.6
2009 Female, age 91, both hemispheres 8.8
2031 Female, age 72, unknown 8.6
2059 Female, age 85, both hemispheres 7.9
1960 Male, age 74, unknown 6.6
2629 Female, age 94, right hemisphere 6.2
Stria terminalis, bed nucleus
nTPM: 6.7
2201 Male, age 74, unknown 7.9
1974 Female, age 91, both hemispheres 6.2
2486 Female, age 94, both hemispheres 6.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 9.1
GTEx sample id Sample description nTPM
6.78.411.23.818.00246810121416182022242628
Brain - Caudate (basal ganglia)
Average nTPM: 9.1
Samples: 300

Max nTPM: 29.3
Min nTPM: 3.8
Std nTPM: 3.4
Median nTPM: 8.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 29.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 22.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 20.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 19.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 18.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 17.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 16.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 16.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 16.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 16.1
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5.16.38.42.912.90246810121416182022
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.0
Samples: 285

Max nTPM: 22.9
Min nTPM: 2.9
Std nTPM: 2.6
Median nTPM: 6.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 22.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 18.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 18.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 14.4
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 14.3
GTEX-1NV5F-0011-R6a-SM-G8LKG 60-69 years, female 13.7
GTEX-11EMC-0011-R6b-SM-GIN8N 60-69 years, female 12.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 12.8
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 12.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 12.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 12.0
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5.87.910.53.316.402468101214161820222426
Brain - Putamen (basal ganglia)
Average nTPM: 8.5
Samples: 254

Max nTPM: 27.4
Min nTPM: 3.3
Std nTPM: 3.2
Median nTPM: 7.9
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 27.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 20.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 18.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 16.4
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 16.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.2
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 15.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 15.1
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 15.1
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 15.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 14.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.7
FF:10164-103B2 76 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 13.0
FF:10037-101F1 23-56 years, mixed 13.0
Putamen
Scaled Tags Per Million: 12.7
FF:10176-103C5 60 years, female 12.7
Globus pallidus
Scaled Tags Per Million: 21.6
FF:10161-103A8 76 years, female 26.0
FF:10175-103C4 60 years, female 17.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 57.3
Pig sample Sample description nTPM
38.539.342.936.439.305101520253035404550
 		Caudate
nTPM: 42.1
Samples: 4

Max nTPM: 53.6
Min nTPM: 36.4
Sample A Female 53.6
Sample B Female 36.4
Sample C Male 39.3
Sample D Male 39.2
44.350.361.943.180.101020304050607080
 		Putamen
nTPM: 55.9
Samples: 4

Max nTPM: 80.1
Min nTPM: 43.1
Sample A Female 80.1
Sample B Female 43.1
Sample C Male 44.7
Sample D Male 55.8
54.057.060.348.966.005101520253035404550556065
 		Septum
nTPM: 57.3
Samples: 4

Max nTPM: 66.0
Min nTPM: 48.9
Sample A Female 66.0
Sample B Female 48.9
Sample C Male 55.7
Sample D Male 58.4
47.452.157.140.864.6051015202530354045505560
 		Ventral pallidum
nTPM: 52.4
Samples: 4

Max nTPM: 64.6
Min nTPM: 40.8
Sample A Female 40.8
Sample B Female 49.6
Sample C Male 54.6
Sample D Male 64.6

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 24.4
Mouse sample Sample description nTPM
23.324.325.423.226.102468101214161820222426
 		Caudate putamen
nTPM: 24.5
Samples: 4

Max nTPM: 26.1
Min nTPM: 23.2
Sample A Male 23.2
Sample B Male 25.1
Sample C Female 23.4
Sample D Female 26.1
20.421.122.018.823.80246810121416182022
 		Septum
nTPM: 21.2
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.8
Sample A Male 18.8
Sample B Male 23.8
Sample C Female 21.4
Sample D Female 20.9
20.521.322.720.524.8024681012141618202224
 		Ventral forebrain
nTPM: 22.0
Samples: 4

Max nTPM: 24.8
Min nTPM: 20.5
Sample A Male 20.5
Sample B Male 22.0
Sample C Female 24.8
Sample D Female 20.5

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