HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:8.6 nTPM
HPA Brain:9.7 nTPM
GTEx:8.6 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:49.3 nTPM
Mouse:19.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200250nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026980
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 9.7
Sample id Sample description nTPM
Hippocampus
nTPM: 9.6
1898 Male, age 80, left hemisphere 11.0
1855 Male, age 76, left hemisphere 10.7
2529 Female, age 94, left hemisphere 10.2
1911 Female, age 85, right hemisphere 9.7
2621 Female, age 67, right hemisphere 8.4
2148 Female, age 91, left hemisphere 7.9
Dentate gyrus
nTPM: 8.7
2010 Male, age 76, both hemispheres 10.8
2530 Female, age 94, left hemisphere 9.6
2528 Male, age 74, both hemispheres 9.5
2246 Female, age 85, both hemispheres 8.1
1927 Female, age 91, both hemispheres 7.5
2531 Female, age 67, both hemispheres 6.9
Entorhinal gyrus
nTPM: 7.6
2117 Female, age 91, right hemisphere 10.6
1938 Female, age 85, left hemisphere 8.3
1787 Male, age 76, left hemisphere 8.1
2686 Male, age 75, right hemisphere 6.8
2613 Female, age 94, left hemisphere 5.9
2764 Male, age 80, right hemisphere 5.8
Hippocampus, CA1
nTPM: 8.2
1873 Female, age 85, both hemispheres 9.5
2082 Female, age 91, right hemisphere 8.7
2045 Male, age 76, both hemispheres 8.4
2527 Male, age 74, both hemispheres 8.4
2749 Male, age 80, left hemisphere 5.9
Hippocampus, CA2
nTPM: 9.7
1940 Female, age 85, left hemisphere 11.6
2249 Male, age 74, both hemispheres 9.8
2113 Female, age 91, right hemisphere 9.7
1892 Male, age 76, both hemispheres 9.1
1963 Male, age 80, left hemisphere 8.9
2437 Female, age 94, left hemisphere 8.8
Hippocampus, CA3
nTPM: 9.0
2436 Male, age 74, both hemispheres 13.0
1867 Male, age 76, both hemispheres 11.1
1891 Female, age 85, both hemispheres 8.7
2861 Female, age 67, both hemispheres 8.6
2137 Male, age 80, left hemisphere 6.5
2620 Female, age 94, left hemisphere 6.2
Parahippocampal cortex
nTPM: 7.7
2250 Female, age 67, right hemisphere 10.9
2018 Male, age 76, both hemispheres 10.4
1850 Male, age 80, both hemispheres 7.6
2245 Female, age 91, both hemispheres 7.6
1933 Female, age 85, both hemispheres 7.4
2692 Male, age 74, both hemispheres 7.2
2693 Female, age 94, both hemispheres 7.2
1990 Female, age 91, right hemisphere 7.1
2532 Female, age 72, left hemisphere 6.1
2622 Female, age 67, right hemisphere 5.5
Perirhinal gyrus
nTPM: 7.2
1841 Female, age 85, right hemisphere 8.9
2521 Female, age 94, right hemisphere 7.4
2848 Male, age 76, right hemisphere 7.0
1847 Female, age 91, left hemisphere 6.7
1794 Male, age 80, right hemisphere 6.2
Subiculum
nTPM: 8.8
2042 Male, age 76, both hemispheres 12.2
2729 Female, age 91, right hemisphere 11.0
2438 Female, age 94, left hemisphere 7.6
2619 Male, age 74, both hemispheres 7.6
1901 Male, age 80, both hemispheres 7.3
1977 Female, age 85, both hemispheres 7.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 8.6
GTEx sample id Sample description nTPM
6.67.910.44.015.50246810121416182022
Brain - Hippocampus
Average nTPM: 8.6
Samples: 255

Max nTPM: 23.3
Min nTPM: 4.0
Std nTPM: 3.0
Median nTPM: 7.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 23.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 21.0
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 17.8
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 17.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 16.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 16.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 15.5
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 15.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 15.0
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 14.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 14.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 21.0
FF:10169-103B7 60 years, female 21.8
FF:10153-102I9 76 years, female 20.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 49.3
Pig sample Sample description nTPM
42.746.448.035.649.1051015202530354045
 		Subiculum
nTPM: 44.4
Samples: 4

Max nTPM: 49.1
Min nTPM: 35.6
Sample A Female 47.6
Sample B Female 49.1
Sample C Male 35.6
Sample D Male 45.1
41.249.357.537.261.6051015202530354045505560
 		Dorsal hippocampus
nTPM: 49.4
Samples: 4

Max nTPM: 61.6
Min nTPM: 37.2
Sample A Female 61.6
Sample B Female 42.5
Sample C Male 56.1
Sample D Male 37.2
35.137.539.531.042.60510152025303540
 		Entorhinal cortex
nTPM: 37.2
Samples: 4

Max nTPM: 42.6
Min nTPM: 31.0
Sample A Female 38.5
Sample B Female 42.6
Sample C Male 36.5
Sample D Male 31.0
39.542.245.836.051.705101520253035404550
 		Ventral hippocampus
nTPM: 43.0
Samples: 4

Max nTPM: 51.7
Min nTPM: 36.0
Sample A Female 51.7
Sample B Female 36.0
Sample C Male 40.6
Sample D Male 43.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 19.6
Mouse sample Sample description nTPM
18.819.320.118.521.402468101214161820
 		Entorhinal cortex
nTPM: 19.6
Samples: 4

Max nTPM: 21.4
Min nTPM: 18.5
Sample A Male 21.4
Sample B Male 19.6
Sample C Female 18.5
Sample D Female 18.9
17.517.618.017.317.6024681012141618
 		Hippocampal formation
nTPM: 17.9
Samples: 4

Max nTPM: 19.1
Min nTPM: 17.3
Sample A Male 19.1
Sample B Male 17.3
Sample C Female 17.6
Sample D Female 17.6

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