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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
55.9
nTPM
HPA Brain:
67.0
nTPM
GTEx:
55.9
nTPM
FANTOM5:
127.9
Scaled Tags Per Million
Pig:
79.1
nTPM
Mouse:
155.4
nTPM
Allen mouse:
7.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 57.2
1870
Female, age 42, unknown
68.5
2411
Female, age 72, unknown
64.5
1827
Male, age 72, unknown
61.2
2019
Male, age 18, unknown
61.1
1833
Male, age 53, unknown
60.5
2828
Female, age 72, unknown
58.5
1830
Male, age 51, unknown
55.7
2586
Male, age 75, left hemisphere
52.1
2219
Male, age 76, both hemispheres
51.8
2666
Male, age 74, left hemisphere
38.5
Dorsal raphe nucleus nTPM: 58.0
2298
Female, age 72, unknown
68.2
2750
Male, age 76, both hemispheres
63.4
1828
Male, age 53, unknown
60.3
2047
Male, age 72, unknown
50.7
2016
Female, age 72, unknown
47.2
Inferior colliculus nTPM: 64.1
2849
Male, age 72, unknown
71.6
2097
Female, age 72, unknown
63.3
1848
Female, age 42, unknown
61.2
1890
Male, age 53, unknown
60.2
Median raphe nucleus nTPM: 67.0
2220
Male, age 76, midline
67.0
Periaquaductal grey, anterior nTPM: 59.8
2502
Female, age 75, unknown
67.6
1795
Male, age 51, unknown
55.9
1947
Male, age 18, unknown
55.8
Periaquaductal grey, dorsal nTPM: 59.9
2850
Male, age 76, both hemispheres
69.4
1840
Male, age 53, unknown
63.9
1831
Male, age 72, unknown
58.2
2464
Female, age 72, unknown
48.3
Periaquaductal grey, lateral nTPM: 51.0
2140
Male, age 76, both hemispheres
54.9
2053
Male, age 18, unknown
53.3
2272
Male, age 74, both hemispheres
44.8
Pretectal area nTPM: 63.1
1817
Female, age 42, unknown
73.2
2007
Male, age 72, unknown
69.7
1816
Male, age 51, unknown
68.5
2667
Female, age 75, unknown
66.9
1944
Female, age 72, unknown
64.0
1815
Male, age 53, unknown
63.0
2407
Male, age 75, both hemispheres
62.3
2224
Female, age 72, unknown
62.1
2825
Male, age 18, unknown
60.3
2273
Male, age 74, both hemispheres
53.8
2316
Male, age 76, right hemisphere
50.7
Red nucleus nTPM: 64.5
1821
Female, age 72, unknown
73.1
2725
Female, age 75, unknown
71.2
1865
Male, age 51, unknown
68.8
2227
Male, age 72, unknown
67.3
2503
Female, age 72, unknown
66.4
2769
Male, age 72, unknown
66.2
2785
Male, age 18, unknown
63.0
1954
Female, age 42, unknown
62.5
2823
Male, age 76, right hemisphere
62.0
1904
Male, age 53, unknown
61.3
2588
Male, age 74, left hemisphere
58.6
2584
Male, age 75, left hemisphere
53.9
Substantia nigra nTPM: 53.8
1889
Female, age 72, unknown
68.2
1916
Female, age 42, unknown
61.7
2665
Male, age 74, both hemispheres
59.1
1851
Male, age 51, unknown
58.5
2699
Male, age 18, unknown
55.9
1941
Male, age 53, unknown
50.6
2590
Female, age 75, unknown
50.1
2583
Male, age 75, right hemisphere
49.3
2409
Female, age 72, unknown
44.1
2241
Male, age 72, unknown
40.5
Superior colliculus nTPM: 61.0
2587
Male, age 74, left hemisphere
69.1
1913
Female, age 42, unknown
67.4
1895
Male, age 76, right hemisphere
67.1
1796
Male, age 53, unknown
66.9
1995
Male, age 72, unknown
63.4
2087
Female, age 72, unknown
62.9
1839
Male, age 51, unknown
58.0
2261
Male, age 18, unknown
57.8
2664
Male, age 75, both hemispheres
49.3
2668
Female, age 75, unknown
47.9
Ventral tegmental area nTPM: 57.9
2223
Female, age 72, unknown
63.9
2410
Female, age 72, unknown
61.9
2218
Male, age 76, both hemispheres
60.1
1915
Female, age 42, unknown
60.0
1942
Male, age 51, unknown
50.7
2021
Male, age 53, unknown
50.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 55.9
Samples: 139
Max nTPM: 99.2
Min nTPM: 16.8
Std nTPM: 15.1
Median nTPM: 54.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
99.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
93.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
92.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
92.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
89.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
84.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
83.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
82.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
82.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
79.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
77.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
77.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
77.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
76.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
76.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
75.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
75.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
74.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
74.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
72.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
72.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
71.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
69.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
69.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
69.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
69.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
68.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
68.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
68.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
68.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
67.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
67.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
67.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
66.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
65.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
64.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
63.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
63.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
62.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
62.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
62.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
61.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
61.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
60.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
60.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
60.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
60.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
58.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
58.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
58.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
58.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
58.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
58.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
58.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
57.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
57.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
57.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
57.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
56.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
56.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
56.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
56.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
56.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
56.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
55.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
55.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
55.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
54.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
54.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
54.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
53.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
53.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
53.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
53.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
53.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
52.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
52.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
52.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
52.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
52.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
52.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
52.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
52.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
51.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
51.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
51.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
50.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
50.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
50.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
49.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
49.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
49.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
49.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
49.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
49.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
49.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
48.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
48.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
48.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
48.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
48.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
48.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
48.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
46.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
46.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
46.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
45.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
45.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
45.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
45.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
44.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
44.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
43.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
43.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
43.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
42.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
42.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
41.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
41.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
40.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
40.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
39.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
39.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
39.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
39.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
38.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
38.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
37.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
37.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
37.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
36.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
34.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
33.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
29.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
22.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
19.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 155.5
Samples: 4
Max nTPM: 169.8
Min nTPM: 149.5
Sample A
Male
169.8
Sample B
Male
152.9
Sample C
Female
149.6
Sample D
Female
149.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.