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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
59.9
nTPM
HPA Brain:
73.1
nTPM
GTEx:
59.9
nTPM
FANTOM5:
180.9
Scaled Tags Per Million
Pig:
71.7
nTPM
Mouse:
175.8
nTPM
Allen mouse:
9.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA008784
Antibody CAB033036
Antibody CAB058691
Glial cells
High
High
High
Neuronal cells
High
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 68.6
1898
Male, age 80, left hemisphere
77.1
2529
Female, age 94, left hemisphere
75.0
2621
Female, age 67, right hemisphere
70.4
1911
Female, age 85, right hemisphere
66.4
1855
Male, age 76, left hemisphere
62.7
2148
Female, age 91, left hemisphere
60.1
Dentate gyrus nTPM: 60.2
2246
Female, age 85, both hemispheres
65.4
1927
Female, age 91, both hemispheres
63.2
2531
Female, age 67, both hemispheres
59.1
2530
Female, age 94, left hemisphere
58.8
2010
Male, age 76, both hemispheres
58.6
2528
Male, age 74, both hemispheres
55.9
Entorhinal gyrus nTPM: 62.7
1938
Female, age 85, left hemisphere
75.0
2764
Male, age 80, right hemisphere
74.0
2117
Female, age 91, right hemisphere
68.5
1787
Male, age 76, left hemisphere
61.6
2686
Male, age 75, right hemisphere
57.3
2613
Female, age 94, left hemisphere
39.9
Hippocampus, CA1 nTPM: 68.9
2749
Male, age 80, left hemisphere
95.3
1873
Female, age 85, both hemispheres
70.6
2527
Male, age 74, both hemispheres
68.9
2045
Male, age 76, both hemispheres
57.4
2082
Female, age 91, right hemisphere
52.3
Hippocampus, CA2 nTPM: 61.1
2249
Male, age 74, both hemispheres
77.4
1892
Male, age 76, both hemispheres
71.5
1963
Male, age 80, left hemisphere
58.2
2113
Female, age 91, right hemisphere
57.5
1940
Female, age 85, left hemisphere
54.2
2437
Female, age 94, left hemisphere
47.6
Hippocampus, CA3 nTPM: 64.1
1867
Male, age 76, both hemispheres
76.8
2137
Male, age 80, left hemisphere
72.1
1891
Female, age 85, both hemispheres
69.5
2620
Female, age 94, left hemisphere
58.6
2861
Female, age 67, both hemispheres
54.1
2436
Male, age 74, both hemispheres
53.4
Parahippocampal cortex nTPM: 60.6
1850
Male, age 80, both hemispheres
79.2
1990
Female, age 91, right hemisphere
70.7
2245
Female, age 91, both hemispheres
67.4
1933
Female, age 85, both hemispheres
64.7
2532
Female, age 72, left hemisphere
62.4
2018
Male, age 76, both hemispheres
58.9
2250
Female, age 67, right hemisphere
56.5
2692
Male, age 74, both hemispheres
50.6
2693
Female, age 94, both hemispheres
48.4
2622
Female, age 67, right hemisphere
47.2
Perirhinal gyrus nTPM: 73.1
1794
Male, age 80, right hemisphere
88.6
1847
Female, age 91, left hemisphere
83.5
1841
Female, age 85, right hemisphere
73.4
2848
Male, age 76, right hemisphere
61.9
2521
Female, age 94, right hemisphere
58.0
Subiculum nTPM: 63.9
1901
Male, age 80, both hemispheres
75.5
1977
Female, age 85, both hemispheres
71.6
2619
Male, age 74, both hemispheres
64.7
2042
Male, age 76, both hemispheres
60.8
2438
Female, age 94, left hemisphere
60.4
2729
Female, age 91, right hemisphere
50.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 59.9
Samples: 197
Max nTPM: 99.1
Min nTPM: 18.7
Std nTPM: 16.0
Median nTPM: 59.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
99.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
96.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
96.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
93.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
92.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
92.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
90.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
89.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
89.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
86.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
86.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
86.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
86.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
85.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
85.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
85.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
85.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
84.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
84.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
82.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
82.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
79.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
79.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
78.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
78.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
77.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
77.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
76.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
76.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
74.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
74.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
74.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
74.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
74.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
73.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
72.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
72.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
72.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
72.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
72.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
72.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
71.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
71.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
71.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
71.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
70.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
70.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
70.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
70.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
70.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
70.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
69.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
69.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
69.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
69.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
69.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
68.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
68.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
68.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
67.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
67.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
67.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
67.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
66.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
66.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
66.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
66.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
66.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
66.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
65.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
65.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
65.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
65.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
65.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
65.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
64.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
64.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
64.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
64.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
64.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
64.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
64.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
64.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
63.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
63.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
63.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
63.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
63.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
63.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
62.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
62.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
61.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
61.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
60.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
59.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
59.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
59.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
59.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
59.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
58.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
58.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
58.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
58.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
57.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
57.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
57.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
57.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
57.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
56.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
56.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
56.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
56.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
56.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
56.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
56.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
55.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
55.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
55.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
55.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
55.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
55.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
54.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
54.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
54.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
54.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
54.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
54.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
53.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
53.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
53.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
53.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
53.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
52.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
52.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
52.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
52.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
52.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
52.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
51.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
51.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
51.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
51.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
50.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
50.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
50.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
50.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
50.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
49.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
49.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
48.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
48.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
48.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
47.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
47.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
47.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
46.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
46.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
46.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
45.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
45.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
45.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
45.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
45.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
44.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
44.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
44.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
44.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
44.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
44.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
43.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
43.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
43.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
42.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
41.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
40.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
40.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
40.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
40.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
39.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
39.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
38.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
37.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
37.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
36.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
35.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
34.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
33.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
33.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
33.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
32.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
31.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
25.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
22.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
21.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
20.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
20.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
18.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
175.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 168.4
Samples: 4
Max nTPM: 180.6
Min nTPM: 156.1
Sample A
Male
180.6
Sample B
Male
157.6
Sample C
Female
156.1
Sample D
Female
179.2
Hippocampal formation nTPM: 175.8
Samples: 4
Max nTPM: 188.0
Min nTPM: 160.5
Sample A
Male
173.2
Sample B
Male
181.4
Sample C
Female
188.0
Sample D
Female
160.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.