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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 13.8
2188
Female, age 91, both hemispheres
15.2
2090
Male, age 80, both hemispheres
14.5
2301
Female, age 85, both hemispheres
13.7
1984
Male, age 76, both hemispheres
12.0
Dorsal cochlear nucleus nTPM: 13.0
2187
Female, age 91, both hemispheres
17.2
2802
Male, age 74, right hemisphere
13.8
2378
Male, age 80, both hemispheres
12.4
2058
Male, age 76, both hemispheres
11.3
2370
Male, age 61, both hemispheres
10.3
Dorsal tegmental nucleus nTPM: 13.7
2083
Male, age 80, both hemispheres
15.4
2326
Male, age 74, both hemispheres
14.1
1936
Male, age 76, left hemisphere
12.9
2358
Male, age 61, both hemispheres
12.3
Dorsolateral tegmental area nTPM: 14.4
2751
Female, age 85, both hemispheres
16.4
2360
Male, age 74, both hemispheres
16.2
2654
Male, age 80, both hemispheres
15.1
2141
Male, age 76, both hemispheres
12.8
2337
Male, age 61, both hemispheres
11.5
Kolliker-Fuse nucleus nTPM: 14.1
2163
Male, age 80, both hemispheres
16.6
2793
Female, age 91, left hemisphere
14.0
2315
Male, age 76, right hemisphere
11.8
Lateral lemniscal nuclei nTPM: 16.6
2169
Male, age 76, both hemispheres
21.4
2453
Male, age 74, right hemisphere
15.9
2036
Male, age 80, both hemispheres
15.8
2746
Female, age 85, left hemisphere
15.1
2320
Female, age 91, left hemisphere
14.9
Lateral parabrachial nucleus nTPM: 14.6
2139
Female, age 85, right hemisphere
17.6
2013
Male, age 80, both hemispheres
15.8
2792
Male, age 76, both hemispheres
13.1
2790
Male, age 61, both hemispheres
11.7
Lateral vestibular nucleus nTPM: 12.9
2311
Male, age 80, both hemispheres
13.1
2184
Male, age 76, both hemispheres
12.6
Locus coeruleus nTPM: 14.0
2788
Male, age 74, unknown
17.1
2123
Female, age 91, both hemispheres
14.9
2014
Male, age 55, unknown
14.8
2720
Male, age 74, both hemispheres
13.8
2162
Male, age 80, both hemispheres
13.4
2317
Female, age 72, unknown
13.2
1980
Male, age 76, both hemispheres
11.0
Medial parabrachial nucleus nTPM: 13.9
2854
Male, age 80, both hemispheres
17.0
2170
Female, age 91, both hemispheres
16.4
2786
Male, age 76, both hemispheres
12.9
2463
Female, age 85, right hemisphere
12.3
2156
Male, age 61, both hemispheres
10.8
Medial periolivary nuclei nTPM: 16.3
2063
Male, age 76, both hemispheres
20.4
2171
Female, age 85, both hemispheres
19.2
2791
Male, age 74, right hemisphere
16.4
2458
Female, age 91, both hemispheres
12.9
2081
Male, age 80, both hemispheres
12.5
Motor facial nucleus nTPM: 15.9
2062
Male, age 76, both hemispheres
20.7
2697
Female, age 85, both hemispheres
19.2
2365
Male, age 74, right hemisphere
15.2
2795
Female, age 91, both hemispheres
14.7
2327
Male, age 80, both hemispheres
13.8
2126
Male, age 61, both hemispheres
11.8
Motor trigeminal nucleus nTPM: 13.9
2079
Male, age 80, both hemispheres
15.9
2309
Male, age 76, both hemispheres
15.7
2560
Male, age 74, both hemispheres
14.1
2335
Male, age 61, both hemispheres
12.1
2321
Female, age 91, both hemispheres
11.8
Nuclei of the trapezoid body nTPM: 17.2
1983
Male, age 76, both hemispheres
21.5
2159
Male, age 61, both hemispheres
18.6
2735
Female, age 85, both hemispheres
18.6
2166
Male, age 80, both hemispheres
14.7
2368
Female, age 91, both hemispheres
12.8
Nucleus raphe magnus nTPM: 17.9
2160
Male, age 61, both hemispheres
22.7
2051
Male, age 76, both hemispheres
19.4
2172
Female, age 85, both hemispheres
18.2
2455
Male, age 74, both hemispheres
17.4
2328
Male, age 80, both hemispheres
15.2
2459
Female, age 91, both hemispheres
14.4
Paramedian reticular nucleus nTPM: 18.6
2050
Female, age 85, both hemispheres
21.7
2052
Male, age 76, both hemispheres
20.5
2057
Male, age 80, both hemispheres
17.1
2313
Male, age 61, both hemispheres
15.2
Pedunculopontine tegmental nucleus nTPM: 16.1
2338
Male, age 61, both hemispheres
16.9
2334
Male, age 80, both hemispheres
15.8
1921
Female, age 85, both hemispheres
15.7
Pontine nuclei nTPM: 19.3
1863
Male, age 55, unknown
24.6
2727
Male, age 61, right hemisphere
22.9
2454
Male, age 74, left hemisphere
21.0
1968
Male, age 76, left hemisphere
19.3
2109
Female, age 72, unknown
18.6
2787
Female, age 85, both hemispheres
18.5
2319
Female, age 91, both hemispheres
16.7
2115
Male, age 80, left hemisphere
12.9
Pontine raphe nucleus nTPM: 15.9
2122
Female, age 85, midline
18.2
2853
Male, age 76, midline
13.6
Posteroventral cochlear nucleus nTPM: 15.0
2752
Female, age 85, both hemispheres
16.9
2135
Female, age 91, both hemispheres
15.3
2341
Male, age 80, both hemispheres
14.9
2070
Male, age 76, both hemispheres
14.3
2371
Male, age 61, both hemispheres
13.7
Principal sensory trigeminal nucleus nTPM: 16.5
2158
Male, age 61, both hemispheres
19.0
2008
Male, age 80, left hemisphere
18.1
2367
Female, age 91, left hemisphere
15.8
2324
Male, age 76, both hemispheres
13.2
Reticular pontine nucleus, caudal nTPM: 15.5
2092
Male, age 76, both hemispheres
17.9
2559
Male, age 74, both hemispheres
15.8
2457
Female, age 91, both hemispheres
15.1
2332
Male, age 80, right hemisphere
13.2
Reticular pontine nucleus, oral nTPM: 15.1
2012
Female, age 85, both hemispheres
19.0
1939
Male, age 80, both hemispheres
17.0
2366
Female, age 91, both hemispheres
16.4
2167
Male, age 76, both hemispheres
14.8
2361
Male, age 74, both hemispheres
8.5
Reticulotegmental nucleus nTPM: 13.4
2325
Male, age 76, both hemispheres
15.8
2322
Female, age 91, both hemispheres
13.2
2333
Male, age 80, both hemispheres
12.3
2452
Male, age 74, both hemispheres
12.3
Spinal trigeminal nucleus, oral nTPM: 13.4
1978
Male, age 76, both hemispheres
13.8
2737
Female, age 85, both hemispheres
13.6
2164
Male, age 80, both hemispheres
12.8
Subcoeruleus area nTPM: 15.5
1958
Male, age 80, both hemispheres
18.7
2369
Female, age 85, left hemisphere
16.0
2323
Female, age 91, left hemisphere
15.7
2089
Male, age 76, left hemisphere
15.3
2451
Male, age 74, both hemispheres
11.6
Superior olive nTPM: 17.5
1875
Female, age 85, both hemispheres
23.5
2020
Male, age 76, both hemispheres
20.4
2364
Male, age 74, right hemisphere
17.9
2329
Male, age 80, right hemisphere
13.4
2561
Female, age 91, both hemispheres
12.2
Ventral periolivary nuclei nTPM: 17.4
2023
Male, age 76, both hemispheres
20.1
2130
Female, age 85, both hemispheres
17.8
2165
Male, age 80, both hemispheres
17.5
2794
Female, age 91, left hemisphere
14.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 14.8
1959
Male, age 76, both hemispheres
17.7
2840
Female, age 85, both hemispheres
17.5
2449
Male, age 74, both hemispheres
15.3
2161
Male, age 80, both hemispheres
14.2
2456
Female, age 91, both hemispheres
12.3
2359
Male, age 61, both hemispheres
11.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.7
Pig sample
Sample description
nTPM
Pons nTPM: 16.7
Samples: 4
Max nTPM: 18.3
Min nTPM: 15.5
Sample A
Female
15.8
Sample B
Female
15.5
Sample C
Male
18.3
Sample D
Male
17.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
