MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA Brain:14.9 nTPM
GTEx:26.1 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:61.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
1870 Female, age 42, unknown 16.1
2411 Female, age 72, unknown 15.5
2019 Male, age 18, unknown 15.0
2666 Male, age 74, left hemisphere 14.8
1830 Male, age 51, unknown 14.3
1827 Male, age 72, unknown 13.9
1833 Male, age 53, unknown 13.7
2219 Male, age 76, both hemispheres 12.5
2828 Female, age 72, unknown 10.8
2586 Male, age 75, left hemisphere 9.7
Dorsal raphe nucleus
nTPM: 12.6
2750 Male, age 76, both hemispheres 13.3
1828 Male, age 53, unknown 13.0
2298 Female, age 72, unknown 12.9
2016 Female, age 72, unknown 12.8
2047 Male, age 72, unknown 11.3
Inferior colliculus
nTPM: 13.2
2097 Female, age 72, unknown 14.5
2849 Male, age 72, unknown 13.3
1848 Female, age 42, unknown 12.5
1890 Male, age 53, unknown 12.5
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Periaquaductal grey, anterior
nTPM: 12.9
1947 Male, age 18, unknown 14.7
2502 Female, age 75, unknown 13.0
1795 Male, age 51, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 12.4
1840 Male, age 53, unknown 13.3
2850 Male, age 76, both hemispheres 13.3
1831 Male, age 72, unknown 11.8
2464 Female, age 72, unknown 11.3
Periaquaductal grey, lateral
nTPM: 12.3
2272 Male, age 74, both hemispheres 13.4
2053 Male, age 18, unknown 13.1
2140 Male, age 76, both hemispheres 10.4
Pretectal area
nTPM: 14.1
1817 Female, age 42, unknown 16.4
2007 Male, age 72, unknown 15.7
1944 Female, age 72, unknown 15.6
2224 Female, age 72, unknown 15.3
2273 Male, age 74, both hemispheres 15.3
1816 Male, age 51, unknown 15.1
1815 Male, age 53, unknown 14.9
2825 Male, age 18, unknown 12.5
2667 Female, age 75, unknown 12.3
2407 Male, age 75, both hemispheres 11.6
2316 Male, age 76, right hemisphere 10.6
Red nucleus
nTPM: 14.9
1821 Female, age 72, unknown 19.6
2725 Female, age 75, unknown 16.9
1865 Male, age 51, unknown 16.7
1954 Female, age 42, unknown 16.2
2823 Male, age 76, right hemisphere 16.1
2503 Female, age 72, unknown 14.6
1904 Male, age 53, unknown 14.4
2785 Male, age 18, unknown 14.2
2769 Male, age 72, unknown 13.3
2227 Male, age 72, unknown 12.9
2588 Male, age 74, left hemisphere 12.5
2584 Male, age 75, left hemisphere 11.3
Substantia nigra
nTPM: 14.3
2241 Male, age 72, unknown 18.2
1889 Female, age 72, unknown 17.2
1941 Male, age 53, unknown 16.9
2665 Male, age 74, both hemispheres 15.1
1851 Male, age 51, unknown 14.6
2409 Female, age 72, unknown 13.0
1916 Female, age 42, unknown 12.1
2590 Female, age 75, unknown 12.0
2583 Male, age 75, right hemisphere 11.9
2699 Male, age 18, unknown 11.6
Superior colliculus
nTPM: 13.4
1895 Male, age 76, right hemisphere 16.6
2587 Male, age 74, left hemisphere 15.6
2668 Female, age 75, unknown 15.0
1913 Female, age 42, unknown 13.7
2261 Male, age 18, unknown 13.5
1839 Male, age 51, unknown 13.1
1995 Male, age 72, unknown 12.9
2087 Female, age 72, unknown 12.9
1796 Male, age 53, unknown 11.5
2664 Male, age 75, both hemispheres 8.7
Ventral tegmental area
nTPM: 12.5
2410 Female, age 72, unknown 14.1
1915 Female, age 42, unknown 13.8
2223 Female, age 72, unknown 13.5
2218 Male, age 76, both hemispheres 12.0
1942 Male, age 51, unknown 10.8
2021 Male, age 53, unknown 10.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 139

Max nTPM: 61.5
Min nTPM: 15.9
Std nTPM: 6.5
Median nTPM: 25.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 61.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 45.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 40.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 40.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 36.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 36.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 36.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 34.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.8
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.1
Sample A Female 18.1
Sample B Female 14.1
Sample C Male 15.5
Sample D Male 15.5
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.9
Sample A Female 17.6
Sample B Female 17.3
Sample C Male 14.9
Sample D Male 15.2
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 15.1
Min nTPM: 13.9
Sample B Female 15.1
Sample C Male 15.0
Sample D Male 13.9
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 17.8
Min nTPM: 12.8
Sample A Female 17.6
Sample B Female 12.8
Sample C Male 17.8
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 63.2
Min nTPM: 59.5
Sample A Male 60.9
Sample B Male 63.2
Sample C Female 59.5
Sample D Female 61.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75990648 Antisense, RP_060608_01_E07, Mouse strain C57BL/6J (56 days, male) 0.3

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