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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.7
Sample id
Sample description
nTPM
Amygdala nTPM: 14.7
2814
Male, age 76, right hemisphere
17.6
2514
Male, age 75, right hemisphere
17.2
2695
Female, age 67, right hemisphere
13.6
2517
Female, age 94, left hemisphere
12.9
1987
Female, age 91, left hemisphere
12.3
Basal amygdala nTPM: 12.2
2609
Male, age 75, right hemisphere
14.0
2685
Female, age 94, left hemisphere
13.6
1955
Male, age 76, both hemispheres
12.8
2110
Male, age 80, left hemisphere
12.1
2827
Female, age 67, right hemisphere
11.0
2243
Female, age 91, right hemisphere
9.7
Central amygdala nTPM: 12.3
1905
Male, age 76, both hemispheres
14.5
2826
Female, age 94, left hemisphere
13.2
2701
Female, age 91, right hemisphere
11.8
2515
Male, age 75, right hemisphere
11.7
2239
Male, age 80, left hemisphere
10.4
Corticomedial amygdala nTPM: 12.5
2429
Female, age 94, left hemisphere
14.6
2240
Male, age 76, both hemispheres
13.9
2428
Male, age 75, right hemisphere
13.8
2829
Male, age 80, left hemisphere
13.4
2242
Female, age 91, right hemisphere
10.8
2535
Female, age 67, right hemisphere
8.4
Lateral amygdala nTPM: 12.0
1883
Male, age 76, both hemispheres
15.8
2516
Male, age 75, right hemisphere
13.6
2534
Female, age 94, left hemisphere
13.0
2830
Female, age 67, right hemisphere
10.2
2256
Male, age 80, left hemisphere
9.8
2255
Female, age 91, right hemisphere
9.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 27.3
Samples: 152
Max nTPM: 58.8
Min nTPM: 15.7
Std nTPM: 7.1
Median nTPM: 26.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
58.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
58.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
51.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
50.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
45.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
45.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
43.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
41.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
40.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
37.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
37.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
37.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
37.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
36.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
36.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
34.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
34.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
34.1
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
33.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
33.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
32.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
32.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
32.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
32.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
32.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
32.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
31.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
31.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
31.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
31.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
31.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
31.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
31.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
31.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
31.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
30.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
30.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
30.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
29.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
29.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
29.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
29.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
29.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
29.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
28.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
28.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
28.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
28.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
28.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
28.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
28.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
28.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
27.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
27.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
27.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
27.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
27.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
27.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
27.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
27.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
27.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
26.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
26.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
26.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
26.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
26.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
26.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
26.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
26.7
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
26.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
26.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
26.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
26.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
26.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
26.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
26.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
26.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
26.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
25.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
25.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
25.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
25.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
25.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
25.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
25.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
25.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
25.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
25.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
24.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
24.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
24.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
24.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
24.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
24.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
24.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
24.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
24.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
24.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
24.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
24.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
24.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
23.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
23.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
23.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
23.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
23.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
23.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
23.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
23.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
23.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
23.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
23.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
23.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
22.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
22.9
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
22.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
22.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
22.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
22.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
22.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
22.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
22.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
21.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
21.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
21.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
21.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
21.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
21.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
21.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
21.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
21.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
21.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
21.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
21.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
20.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
20.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
20.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
20.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
20.2
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
20.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
19.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
19.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
19.2
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
19.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
18.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
18.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
18.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
18.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
16.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
16.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
15.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
15.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 51.7
Samples: 4
Max nTPM: 53.8
Min nTPM: 48.6
Sample A
Male
48.6
Sample B
Male
52.8
Sample C
Female
53.8
Sample D
Female
51.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.