MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA Brain:16.5 nTPM
GTEx:14.0 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:26.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.3
2019 Male, age 18, unknown 13.7
2219 Male, age 76, both hemispheres 13.5
2411 Female, age 72, unknown 13.4
1870 Female, age 42, unknown 13.2
1827 Male, age 72, unknown 13.1
2586 Male, age 75, left hemisphere 12.8
1833 Male, age 53, unknown 11.8
2666 Male, age 74, left hemisphere 11.1
1830 Male, age 51, unknown 10.9
2828 Female, age 72, unknown 9.3
Dorsal raphe nucleus
nTPM: 15.1
2298 Female, age 72, unknown 17.5
1828 Male, age 53, unknown 15.6
2047 Male, age 72, unknown 15.5
2750 Male, age 76, both hemispheres 14.2
2016 Female, age 72, unknown 12.5
Inferior colliculus
nTPM: 14.2
2097 Female, age 72, unknown 16.4
1890 Male, age 53, unknown 13.9
1848 Female, age 42, unknown 13.5
2849 Male, age 72, unknown 13.0
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Periaquaductal grey, anterior
nTPM: 12.8
2502 Female, age 75, unknown 12.9
1795 Male, age 51, unknown 12.7
1947 Male, age 18, unknown 12.7
Periaquaductal grey, dorsal
nTPM: 12.6
1840 Male, age 53, unknown 14.2
2464 Female, age 72, unknown 12.9
1831 Male, age 72, unknown 11.8
2850 Male, age 76, both hemispheres 11.5
Periaquaductal grey, lateral
nTPM: 11.5
2272 Male, age 74, both hemispheres 12.5
2053 Male, age 18, unknown 11.9
2140 Male, age 76, both hemispheres 10.1
Pretectal area
nTPM: 12.9
1816 Male, age 51, unknown 15.4
2007 Male, age 72, unknown 15.3
2224 Female, age 72, unknown 14.6
1817 Female, age 42, unknown 14.5
1944 Female, age 72, unknown 14.5
1815 Male, age 53, unknown 12.5
2273 Male, age 74, both hemispheres 11.9
2825 Male, age 18, unknown 11.9
2667 Female, age 75, unknown 11.4
2316 Male, age 76, right hemisphere 9.8
2407 Male, age 75, both hemispheres 9.7
Red nucleus
nTPM: 11.3
1821 Female, age 72, unknown 13.9
2725 Female, age 75, unknown 13.3
2785 Male, age 18, unknown 12.0
2503 Female, age 72, unknown 11.8
2227 Male, age 72, unknown 11.5
1954 Female, age 42, unknown 11.3
2588 Male, age 74, left hemisphere 10.8
2823 Male, age 76, right hemisphere 10.7
2769 Male, age 72, unknown 10.3
1904 Male, age 53, unknown 10.0
2584 Male, age 75, left hemisphere 10.0
1865 Male, age 51, unknown 9.7
Substantia nigra
nTPM: 15.2
1916 Female, age 42, unknown 19.3
2241 Male, age 72, unknown 19.2
1941 Male, age 53, unknown 17.1
2409 Female, age 72, unknown 16.1
1889 Female, age 72, unknown 14.8
1851 Male, age 51, unknown 14.6
2665 Male, age 74, both hemispheres 13.8
2590 Female, age 75, unknown 13.2
2699 Male, age 18, unknown 12.3
2583 Male, age 75, right hemisphere 11.2
Superior colliculus
nTPM: 11.6
1895 Male, age 76, right hemisphere 15.0
2087 Female, age 72, unknown 13.3
2587 Male, age 74, left hemisphere 13.0
1839 Male, age 51, unknown 12.5
2668 Female, age 75, unknown 12.1
2261 Male, age 18, unknown 12.0
1796 Male, age 53, unknown 11.3
2664 Male, age 75, both hemispheres 10.0
1913 Female, age 42, unknown 8.5
1995 Male, age 72, unknown 8.0
Ventral tegmental area
nTPM: 13.4
1915 Female, age 42, unknown 15.3
2218 Male, age 76, both hemispheres 15.3
2410 Female, age 72, unknown 13.9
1942 Male, age 51, unknown 13.3
2021 Male, age 53, unknown 11.9
2223 Female, age 72, unknown 10.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.0
Samples: 139

Max nTPM: 39.7
Min nTPM: 5.1
Std nTPM: 4.9
Median nTPM: 13.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 22.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 22.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 21.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.2
FF:10158-103A5 76 years, female 15.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.0
Samples: 4

Max nTPM: 19.3
Min nTPM: 10.3
Sample A Female 19.3
Sample B Female 12.9
Sample C Male 17.6
Sample D Male 10.3
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 20.2
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 13.5
Sample C Male 20.2
Sample D Male 18.9
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 15.5
Min nTPM: 11.4
Sample B Female 12.9
Sample C Male 15.5
Sample D Male 11.4
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.1
Sample A Female 18.4
Sample B Female 14.1
Sample C Male 20.1
Sample D Male 16.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 27.6
Min nTPM: 25.5
Sample A Male 27.6
Sample B Male 25.5
Sample C Female 25.5
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
1965 Antisense, RP_040604_01_C04, Mouse strain C57BL/6J (56 days, male) 1.4
1964 Antisense, RP_040604_01_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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