HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:13.8 nTPM
GTEx:12.6 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:14.0 nTPM
Mouse:30.8 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030103Antibody HPA030104
Glial cells MediumLow
Neuronal cells MediumMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 13.8
Sample id Sample description nTPM
Hippocampus
nTPM: 12.2
1898 Male, age 80, left hemisphere 14.1
2148 Female, age 91, left hemisphere 13.1
2529 Female, age 94, left hemisphere 12.6
2621 Female, age 67, right hemisphere 11.6
1855 Male, age 76, left hemisphere 11.4
1911 Female, age 85, right hemisphere 10.1
Dentate gyrus
nTPM: 11.7
1927 Female, age 91, both hemispheres 15.2
2528 Male, age 74, both hemispheres 13.0
2246 Female, age 85, both hemispheres 11.3
2010 Male, age 76, both hemispheres 10.9
2531 Female, age 67, both hemispheres 10.3
2530 Female, age 94, left hemisphere 9.6
Entorhinal gyrus
nTPM: 11.4
1938 Female, age 85, left hemisphere 12.7
2613 Female, age 94, left hemisphere 12.4
1787 Male, age 76, left hemisphere 12.1
2764 Male, age 80, right hemisphere 12.0
2117 Female, age 91, right hemisphere 10.1
2686 Male, age 75, right hemisphere 8.9
Hippocampus, CA1
nTPM: 12.9
2749 Male, age 80, left hemisphere 15.9
2527 Male, age 74, both hemispheres 14.2
1873 Female, age 85, both hemispheres 12.2
2082 Female, age 91, right hemisphere 11.3
2045 Male, age 76, both hemispheres 10.8
Hippocampus, CA2
nTPM: 12.9
1892 Male, age 76, both hemispheres 16.3
1963 Male, age 80, left hemisphere 15.0
2249 Male, age 74, both hemispheres 12.9
1940 Female, age 85, left hemisphere 11.1
2113 Female, age 91, right hemisphere 11.0
2437 Female, age 94, left hemisphere 10.9
Hippocampus, CA3
nTPM: 12.8
2436 Male, age 74, both hemispheres 15.5
2620 Female, age 94, left hemisphere 13.4
2137 Male, age 80, left hemisphere 13.0
1867 Male, age 76, both hemispheres 12.8
1891 Female, age 85, both hemispheres 11.0
2861 Female, age 67, both hemispheres 10.9
Parahippocampal cortex
nTPM: 12.0
1850 Male, age 80, both hemispheres 14.1
1990 Female, age 91, right hemisphere 13.7
1933 Female, age 85, both hemispheres 12.5
2250 Female, age 67, right hemisphere 12.5
2245 Female, age 91, both hemispheres 12.1
2693 Female, age 94, both hemispheres 12.1
2532 Female, age 72, left hemisphere 11.5
2692 Male, age 74, both hemispheres 11.3
2622 Female, age 67, right hemisphere 10.8
2018 Male, age 76, both hemispheres 9.6
Perirhinal gyrus
nTPM: 13.8
1847 Female, age 91, left hemisphere 16.2
1794 Male, age 80, right hemisphere 14.0
1841 Female, age 85, right hemisphere 13.8
2521 Female, age 94, right hemisphere 13.3
2848 Male, age 76, right hemisphere 11.4
Subiculum
nTPM: 11.7
2438 Female, age 94, left hemisphere 13.2
2619 Male, age 74, both hemispheres 13.1
1901 Male, age 80, both hemispheres 12.0
1977 Female, age 85, both hemispheres 11.7
2729 Female, age 91, right hemisphere 11.6
2042 Male, age 76, both hemispheres 8.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.6
Samples: 197

Max nTPM: 26.7
Min nTPM: 4.2
Std nTPM: 3.9
Median nTPM: 12.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 26.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 25.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 22.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 21.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 21.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 20.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 20.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 19.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 19.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 19.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 19.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.6
FF:10169-103B7 60 years, female 16.6
FF:10153-102I9 76 years, female 16.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 14.0
Pig sample Sample description nTPM
Subiculum
nTPM: 13.3
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.8
Sample A Female 15.8
Sample B Female 12.7
Sample C Male 11.8
Sample D Male 12.9
Dorsal hippocampus
nTPM: 13.0
Samples: 4

Max nTPM: 13.5
Min nTPM: 12.6
Sample A Female 13.2
Sample B Female 12.6
Sample C Male 13.5
Sample D Male 12.7
Entorhinal cortex
nTPM: 14.0
Samples: 4

Max nTPM: 15.2
Min nTPM: 13.3
Sample A Female 13.9
Sample B Female 15.2
Sample C Male 13.5
Sample D Male 13.3
Ventral hippocampus
nTPM: 12.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.8
Sample A Female 14.6
Sample B Female 10.8
Sample C Male 14.3
Sample D Male 11.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 30.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 24.5
Sample A Male 26.1
Sample B Male 24.5
Sample C Female 28.9
Sample D Female 25.9
Hippocampal formation
nTPM: 30.9
Samples: 4

Max nTPM: 34.2
Min nTPM: 27.7
Sample A Male 34.2
Sample B Male 32.6
Sample C Female 28.9
Sample D Female 27.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
1965 Antisense, RP_040604_01_C04, Mouse strain C57BL/6J (56 days, male) 1.6
1964 Antisense, RP_040604_01_C04, Mouse strain C57BL/6J (56 days, male) 0.5

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