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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
331.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 153.9
2301
Female, age 85, both hemispheres
174.1
1984
Male, age 76, both hemispheres
166.7
2090
Male, age 80, both hemispheres
138.4
2188
Female, age 91, both hemispheres
136.5
Dorsal cochlear nucleus nTPM: 173.4
2370
Male, age 61, both hemispheres
214.3
2058
Male, age 76, both hemispheres
202.8
2802
Male, age 74, right hemisphere
164.4
2187
Female, age 91, both hemispheres
162.1
2378
Male, age 80, both hemispheres
123.4
Dorsal tegmental nucleus nTPM: 172.7
2083
Male, age 80, both hemispheres
208.3
1936
Male, age 76, left hemisphere
178.2
2358
Male, age 61, both hemispheres
164.6
2326
Male, age 74, both hemispheres
139.6
Dorsolateral tegmental area nTPM: 164.2
2654
Male, age 80, both hemispheres
209.6
2141
Male, age 76, both hemispheres
194.0
2751
Female, age 85, both hemispheres
172.3
2360
Male, age 74, both hemispheres
150.3
2337
Male, age 61, both hemispheres
94.8
Kolliker-Fuse nucleus nTPM: 179.7
2163
Male, age 80, both hemispheres
233.2
2793
Female, age 91, left hemisphere
191.2
2315
Male, age 76, right hemisphere
114.6
Lateral lemniscal nuclei nTPM: 304.5
2453
Male, age 74, right hemisphere
343.9
2036
Male, age 80, both hemispheres
343.0
2169
Male, age 76, both hemispheres
319.6
2746
Female, age 85, left hemisphere
312.2
2320
Female, age 91, left hemisphere
204.0
Lateral parabrachial nucleus nTPM: 216.2
2139
Female, age 85, right hemisphere
333.7
2790
Male, age 61, both hemispheres
234.1
2013
Male, age 80, both hemispheres
200.9
2792
Male, age 76, both hemispheres
96.0
Lateral vestibular nucleus nTPM: 193.5
2184
Male, age 76, both hemispheres
214.1
2311
Male, age 80, both hemispheres
172.9
Locus coeruleus nTPM: 243.7
2123
Female, age 91, both hemispheres
285.3
2317
Female, age 72, unknown
269.1
2720
Male, age 74, both hemispheres
254.1
2014
Male, age 55, unknown
246.2
1980
Male, age 76, both hemispheres
232.2
2162
Male, age 80, both hemispheres
209.9
2788
Male, age 74, unknown
209.2
Medial parabrachial nucleus nTPM: 201.0
2156
Male, age 61, both hemispheres
249.2
2854
Male, age 80, both hemispheres
198.8
2786
Male, age 76, both hemispheres
193.2
2170
Female, age 91, both hemispheres
186.6
2463
Female, age 85, right hemisphere
177.0
Medial periolivary nuclei nTPM: 278.0
2171
Female, age 85, both hemispheres
422.3
2063
Male, age 76, both hemispheres
345.2
2791
Male, age 74, right hemisphere
275.9
2081
Male, age 80, both hemispheres
179.4
2458
Female, age 91, both hemispheres
167.0
Motor facial nucleus nTPM: 270.7
2062
Male, age 76, both hemispheres
380.2
2365
Male, age 74, right hemisphere
313.2
2327
Male, age 80, both hemispheres
278.0
2697
Female, age 85, both hemispheres
241.8
2795
Female, age 91, both hemispheres
209.4
2126
Male, age 61, both hemispheres
201.4
Motor trigeminal nucleus nTPM: 241.3
2079
Male, age 80, both hemispheres
287.0
2560
Male, age 74, both hemispheres
285.6
2335
Male, age 61, both hemispheres
250.1
2309
Male, age 76, both hemispheres
223.0
2321
Female, age 91, both hemispheres
161.0
Nuclei of the trapezoid body nTPM: 327.1
2735
Female, age 85, both hemispheres
465.1
2159
Male, age 61, both hemispheres
386.0
1983
Male, age 76, both hemispheres
339.3
2166
Male, age 80, both hemispheres
239.2
2368
Female, age 91, both hemispheres
205.8
Nucleus raphe magnus nTPM: 331.5
2172
Female, age 85, both hemispheres
453.4
2160
Male, age 61, both hemispheres
435.7
2455
Male, age 74, both hemispheres
384.8
2051
Male, age 76, both hemispheres
262.6
2328
Male, age 80, both hemispheres
254.3
2459
Female, age 91, both hemispheres
198.4
Paramedian reticular nucleus nTPM: 226.6
2050
Female, age 85, both hemispheres
289.8
2313
Male, age 61, both hemispheres
251.5
2057
Male, age 80, both hemispheres
240.4
2052
Male, age 76, both hemispheres
124.6
Pedunculopontine tegmental nucleus nTPM: 188.0
1921
Female, age 85, both hemispheres
242.2
2334
Male, age 80, both hemispheres
170.9
2338
Male, age 61, both hemispheres
151.0
Pontine nuclei nTPM: 316.4
2787
Female, age 85, both hemispheres
552.2
2727
Male, age 61, right hemisphere
376.6
1968
Male, age 76, left hemisphere
337.1
1863
Male, age 55, unknown
321.6
2109
Female, age 72, unknown
312.1
2454
Male, age 74, left hemisphere
251.9
2115
Male, age 80, left hemisphere
217.2
2319
Female, age 91, both hemispheres
162.4
Pontine raphe nucleus nTPM: 274.2
2122
Female, age 85, midline
337.5
2853
Male, age 76, midline
210.9
Posteroventral cochlear nucleus nTPM: 171.5
2752
Female, age 85, both hemispheres
295.1
2371
Male, age 61, both hemispheres
196.8
2070
Male, age 76, both hemispheres
194.5
2135
Female, age 91, both hemispheres
86.7
2341
Male, age 80, both hemispheres
84.6
Principal sensory trigeminal nucleus nTPM: 269.7
2158
Male, age 61, both hemispheres
393.2
2008
Male, age 80, left hemisphere
322.6
2324
Male, age 76, both hemispheres
188.9
2367
Female, age 91, left hemisphere
174.2
Reticular pontine nucleus, caudal nTPM: 223.3
2332
Male, age 80, right hemisphere
307.6
2092
Male, age 76, both hemispheres
229.5
2559
Male, age 74, both hemispheres
190.4
2457
Female, age 91, both hemispheres
165.6
Reticular pontine nucleus, oral nTPM: 218.5
2361
Male, age 74, both hemispheres
296.0
2012
Female, age 85, both hemispheres
275.3
2167
Male, age 76, both hemispheres
181.9
1939
Male, age 80, both hemispheres
180.8
2366
Female, age 91, both hemispheres
158.6
Reticulotegmental nucleus nTPM: 210.6
2325
Male, age 76, both hemispheres
248.9
2452
Male, age 74, both hemispheres
229.5
2333
Male, age 80, both hemispheres
201.2
2322
Female, age 91, both hemispheres
162.8
Spinal trigeminal nucleus, oral nTPM: 235.2
1978
Male, age 76, both hemispheres
256.4
2737
Female, age 85, both hemispheres
254.3
2164
Male, age 80, both hemispheres
195.0
Subcoeruleus area nTPM: 220.1
2089
Male, age 76, left hemisphere
285.7
1958
Male, age 80, both hemispheres
242.3
2323
Female, age 91, left hemisphere
241.0
2451
Male, age 74, both hemispheres
193.9
2369
Female, age 85, left hemisphere
137.5
Superior olive nTPM: 264.1
1875
Female, age 85, both hemispheres
356.6
2364
Male, age 74, right hemisphere
264.8
2020
Male, age 76, both hemispheres
242.0
2329
Male, age 80, right hemisphere
241.2
2561
Female, age 91, both hemispheres
215.9
Ventral periolivary nuclei nTPM: 285.4
2130
Female, age 85, both hemispheres
382.8
2165
Male, age 80, both hemispheres
313.1
2794
Female, age 91, left hemisphere
235.2
2023
Male, age 76, both hemispheres
210.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 231.2
2449
Male, age 74, both hemispheres
356.9
1959
Male, age 76, both hemispheres
253.1
2840
Female, age 85, both hemispheres
222.9
2161
Male, age 80, both hemispheres
217.2
2359
Male, age 61, both hemispheres
171.3
2456
Female, age 91, both hemispheres
165.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
246.8
Pig sample
Sample description
nTPM
Pons nTPM: 246.8
Samples: 4
Max nTPM: 501.4
Min nTPM: 139.4
Sample A
Female
501.4
Sample B
Female
139.4
Sample C
Male
154.4
Sample D
Male
191.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
