MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.3 nTPM
HPA Brain:342.0 nTPM
GTEx:79.3 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:275.3 nTPM
Mouse:258.9 nTPM
Allen mouse:19.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 342.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 229.6
2666 Male, age 74, left hemisphere 317.8
2019 Male, age 18, unknown 303.3
1827 Male, age 72, unknown 279.4
2828 Female, age 72, unknown 250.9
2411 Female, age 72, unknown 222.8
2586 Male, age 75, left hemisphere 216.7
2219 Male, age 76, both hemispheres 194.1
1870 Female, age 42, unknown 181.2
1833 Male, age 53, unknown 177.0
1830 Male, age 51, unknown 153.3
Dorsal raphe nucleus
nTPM: 176.8
2298 Female, age 72, unknown 258.7
1828 Male, age 53, unknown 178.0
2047 Male, age 72, unknown 167.1
2750 Male, age 76, both hemispheres 162.9
2016 Female, age 72, unknown 117.4
Inferior colliculus
nTPM: 253.7
2097 Female, age 72, unknown 362.5
1848 Female, age 42, unknown 239.5
2849 Male, age 72, unknown 207.1
1890 Male, age 53, unknown 205.7
Median raphe nucleus
nTPM: 194.7
2220 Male, age 76, midline 194.7
Periaquaductal grey, anterior
nTPM: 239.3
1795 Male, age 51, unknown 289.5
2502 Female, age 75, unknown 233.2
1947 Male, age 18, unknown 195.2
Periaquaductal grey, dorsal
nTPM: 195.6
1831 Male, age 72, unknown 222.6
2464 Female, age 72, unknown 215.7
1840 Male, age 53, unknown 211.4
2850 Male, age 76, both hemispheres 132.8
Periaquaductal grey, lateral
nTPM: 160.5
2053 Male, age 18, unknown 195.2
2140 Male, age 76, both hemispheres 154.8
2272 Male, age 74, both hemispheres 131.6
Pretectal area
nTPM: 342.0
1816 Male, age 51, unknown 602.1
1944 Female, age 72, unknown 554.4
1817 Female, age 42, unknown 457.6
2007 Male, age 72, unknown 444.7
2667 Female, age 75, unknown 425.7
1815 Male, age 53, unknown 361.6
2224 Female, age 72, unknown 207.1
2407 Male, age 75, both hemispheres 203.5
2316 Male, age 76, right hemisphere 191.0
2825 Male, age 18, unknown 170.2
2273 Male, age 74, both hemispheres 144.5
Red nucleus
nTPM: 174.2
2785 Male, age 18, unknown 286.9
2584 Male, age 75, left hemisphere 204.9
1821 Female, age 72, unknown 187.3
2588 Male, age 74, left hemisphere 182.0
2503 Female, age 72, unknown 172.1
1954 Female, age 42, unknown 170.3
2823 Male, age 76, right hemisphere 162.7
2769 Male, age 72, unknown 161.7
1904 Male, age 53, unknown 153.6
2227 Male, age 72, unknown 152.8
1865 Male, age 51, unknown 149.3
2725 Female, age 75, unknown 106.3
Substantia nigra
nTPM: 193.1
1889 Female, age 72, unknown 353.8
1941 Male, age 53, unknown 253.1
1916 Female, age 42, unknown 230.7
1851 Male, age 51, unknown 190.9
2665 Male, age 74, both hemispheres 182.3
2583 Male, age 75, right hemisphere 181.7
2409 Female, age 72, unknown 162.5
2241 Male, age 72, unknown 152.9
2699 Male, age 18, unknown 112.9
2590 Female, age 75, unknown 109.7
Superior colliculus
nTPM: 305.5
2668 Female, age 75, unknown 547.5
2087 Female, age 72, unknown 487.5
2261 Male, age 18, unknown 353.5
1796 Male, age 53, unknown 303.6
2664 Male, age 75, both hemispheres 260.4
1913 Female, age 42, unknown 253.4
1895 Male, age 76, right hemisphere 249.7
1995 Male, age 72, unknown 228.9
1839 Male, age 51, unknown 200.9
2587 Male, age 74, left hemisphere 169.2
Ventral tegmental area
nTPM: 187.2
2410 Female, age 72, unknown 238.3
1915 Female, age 42, unknown 201.9
2218 Male, age 76, both hemispheres 189.6
1942 Male, age 51, unknown 172.0
2223 Female, age 72, unknown 167.1
2021 Male, age 53, unknown 154.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 79.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.3
Samples: 139

Max nTPM: 408.2
Min nTPM: 17.1
Std nTPM: 58.1
Median nTPM: 61.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 408.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 302.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 240.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 230.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 217.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 178.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 170.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 170.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 166.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 163.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 160.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.9
FF:10158-103A5 76 years, female 91.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 275.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.4
Samples: 4

Max nTPM: 163.0
Min nTPM: 47.7
Sample A Female 155.8
Sample B Female 83.1
Sample C Male 163.0
Sample D Male 47.7
Midbrain
nTPM: 263.0
Samples: 4

Max nTPM: 474.8
Min nTPM: 57.7
Sample A Female 57.7
Sample B Female 100.1
Sample C Male 474.8
Sample D Male 419.5
Periaqueductal gray
nTPM: 113.9
Samples: 3

Max nTPM: 142.1
Min nTPM: 99.4
Sample B Female 100.2
Sample C Male 142.1
Sample D Male 99.4
Superior colliculi
nTPM: 275.3
Samples: 4

Max nTPM: 394.9
Min nTPM: 163.9
Sample A Female 284.9
Sample B Female 163.9
Sample C Male 394.9
Sample D Male 257.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 258.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 258.9
Samples: 4

Max nTPM: 271.3
Min nTPM: 240.1
Sample A Male 271.3
Sample B Male 240.1
Sample C Female 265.2
Sample D Female 258.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 19.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.7
684 Antisense, RP_040315_01_21, Mouse strain C57BL/6J (56 days, male) 19.7
685 Antisense, RP_040315_01_21, Mouse strain C57BL/6J (56 days, male) 19.2

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