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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS20 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4300.3
Number of samples
349
Samples
Sample
Description
TPM
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
87067.3
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
21834.4
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
15278.4
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
13876.2
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
13471.2
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
12071.1
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
11961.6
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
9615.7
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
9546.5
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
9294.3
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
9113.5
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
9090.6
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
8936.6
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
8905.8
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
8905.4
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
8737.8
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
8513.3
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
8150.5
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
7914.6
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
7777.2
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
7719.0
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
7715.3
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
7640.0
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
7525.0
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
7392.0
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
7375.2
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
7224.4
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
7186.0
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
7053.2
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
7041.2
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
6743.1
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
6610.2
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
6574.2
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
6416.0
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
6356.0
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
6349.9
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
6302.9
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
6300.0
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
6291.6
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
6215.2
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
6164.3
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
6156.9
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
6134.5
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
6129.0
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
6096.1
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
6018.1
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
6004.7
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
6002.6
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
5963.3
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
5959.9
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
5877.0
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
5876.9
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
5865.5
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
5839.0
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
5820.4
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
5789.6
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
5758.2
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
5751.5
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
5728.2
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
5708.2
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
5624.9
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
5588.5
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
5584.2
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
5564.3
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
5533.1
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
5532.3
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
5504.0
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
5416.8
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
5364.7
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
5360.5
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
5360.1
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
5347.7
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
5330.0
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
5325.1
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
5269.3
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
5261.3
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
5254.3
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
5198.4
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
5183.2
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
5181.7
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
5147.4
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
5076.0
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
4973.3
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
4945.1
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
4935.5
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
4914.6
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
4908.9
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
4807.2
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
4765.1
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
4744.4
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
4737.0
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
4735.9
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
4734.3
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
4734.0
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
4707.4
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
4687.6
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
4685.0
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
4671.6
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
4654.6
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
4645.3
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
4634.7
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
4628.1
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
4614.9
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
4596.5
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
4573.8
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
4567.0
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
4563.6
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
4557.7
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
4551.7
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
4535.4
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
4535.3
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
4513.4
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
4475.6
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
4472.7
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
4386.6
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
4380.9
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
4378.8
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
4371.0
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
4343.2
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
4285.2
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
4270.0
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
4267.0
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
4257.6
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
4249.1
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
4218.0
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
4214.9
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
4202.9
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
4200.2
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
4181.6
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
4166.8
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
4145.4
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
4115.1
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
4076.9
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
4048.7
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
4039.6
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
4004.2
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
4000.3
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
3986.6
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
3981.1
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
3976.5
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
3964.0
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
3896.8
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
3888.1
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
3886.2
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
3855.0
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
3851.3
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
3848.5
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
3846.1
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
3835.5
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
3823.0
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
3810.8
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
3774.0
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
3769.9
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
3762.6
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
3754.1
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
3749.3
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
3737.4
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
3700.5
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
3676.1
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
3662.1
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
3645.5
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
3640.8
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
3623.8
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
3589.9
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
3586.9
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
3580.4
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
3578.1
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
3576.4
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
3575.4
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
3567.0
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
3566.8
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
3539.1
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
3508.4
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
3486.4
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
3485.9
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
3474.7
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
3443.6
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
3437.8
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
3427.7
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
3410.7
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
3405.8
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
3390.1
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
3377.0
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
3370.7
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
3336.3
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
3321.5
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
3309.8
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
3287.7
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
3274.3
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
3271.8
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
3269.3
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
3262.6
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
3260.7
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
3254.5
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
3253.9
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
3249.7
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
3243.1
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
3216.1
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
3203.9
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
3199.7
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
3198.4
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
3189.0
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
3165.2
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
3162.1
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
3161.4
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
3155.0
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
3150.4
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
3140.8
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
3134.0
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
3132.8
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
3124.6
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
3119.5
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
3118.4
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
3117.1
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
3114.3
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
3104.5
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
3094.5
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
3091.9
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
3087.4
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
3070.1
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
3055.4
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
3046.1
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
3037.5
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
3031.0
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
3029.4
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
3025.0
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
3010.5
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
3007.6
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
2997.9
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
2996.9
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
2984.1
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
2958.6
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
2957.2
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
2948.1
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
2927.1
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
2923.5
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
2882.0
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
2878.0
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
2877.3
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
2876.3
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
2871.1
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
2870.8
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
2864.3
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
2863.8
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
2863.1
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
2836.2
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
2816.7
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
2811.9
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
2811.4
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
2808.2
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
2802.7
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
2776.1
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
2763.1
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
2746.9
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
2746.7
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
2731.1
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
2721.5
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
2707.7
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
2695.9
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
2695.4
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
2680.9
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
2679.4
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
2675.8
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
2651.0
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
2631.6
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
2627.7
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
2623.7
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
2621.6
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
2616.6
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
2616.2
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
2600.4
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
2575.5
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
2524.0
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
2523.8
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
2497.0
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
2494.4
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
2489.1
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
2487.4
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
2485.1
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
2450.1
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
2446.5
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
2437.5
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
2424.1
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
2419.7
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
2417.1
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
2403.4
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
2387.6
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
2380.3
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
2361.0
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
2344.7
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
2328.8
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
2314.6
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
2306.9
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
2298.4
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
2297.0
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
2293.8
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
2282.0
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
2281.4
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
2267.4
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
2262.9
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
2258.6
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
2252.5
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
2235.8
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
2228.4
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
2222.1
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
2208.8
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
2196.3
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
2175.2
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
2169.9
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
2164.4
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
2109.4
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
2065.3
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
2044.0
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
2043.8
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
2017.8
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
2006.1
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
1966.7
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
1923.1
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
1912.3
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
1871.3
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
1869.0
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
1863.0
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
1851.9
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
1849.0
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
1837.2
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
1820.4
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
1816.9
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
1808.8
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
1739.1
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
1734.2
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
1706.2
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
1703.6
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
1698.6
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
1683.7
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
1630.6
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
1604.0
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
1602.5
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
1552.1
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
1541.6
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
1487.1
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
1441.8
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
1439.9
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
1421.3
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
1377.5
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
1372.8
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
1313.3
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
1260.0
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
1233.4
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS20 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3593.1
Number of samples
81
Samples
Sample
Description
TPM
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
24527.6
DO46356
0 years, female, NA, stage:III, dead, 911 days
13417.2
DO46331
0 years, female, NA, stage:III, dead, 612 days
8798.7
DO46390
0 years, female, NA, stage:III, dead, 374 days
7292.7
DO46366
0 years, female, NA, stage:III, dead, 2054 days
7110.7
DO46333
0 years, female, NA, stage:III, dead, 359 days
6890.7
DO46588
0 years, female, NA, stage:III, dead, 438 days
6567.7
DO46576
0 years, female, NA, stage:III, alive, 133 days
6078.8
DO46342
0 years, female, NA, stage:III, dead, 1398 days
6052.6
DO46402
0 years, female, NA, stage:III, dead, 511 days
5857.3
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
5537.3
DO46591
0 years, female, NA, stage:III, dead, 195 days
5441.0
DO46338
0 years, female, NA, stage:III, dead, 596 days
5268.7
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
5047.0
DO46463
0 years, female, NA, stage:III, dead, 2451 days
4671.8
DO46453
0 years, female, NA, stage:III, dead, 3294 days
4534.3
DO46546
0 years, female, NA, stage:III, dead, 1889 days
4397.3
DO46384
0 years, female, NA, stage:III, dead, 614 days
4273.1
DO46398
0 years, female, NA, stage:III, alive, 437 days
4065.4
DO46581
0 years, female, NA, stage:III, dead, 408 days
4004.0
DO46551
0 years, female, NA, stage:III, dead, 1055 days
3950.0
DO46586
0 years, female, NA, stage:III, dead, 1019 days
3859.3
DO46518
0 years, female, NA, stage:III, alive, 2960 days
3766.7
DO46611
0 years, female, NA, stage:III, dead, 734 days
3602.4
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
3572.8
DO46400
0 years, female, NA, stage:III, dead, 719 days
3467.7
DO46443
0 years, female, NA, stage:III, dead, 2464 days
3349.4
DO46561
0 years, female, NA, stage:III, dead, 195 days
3343.0
DO46380
0 years, female, NA, stage:III, dead, 1423 days
3245.6
DO46568
0 years, female, NA, stage:III, dead, 320 days
3235.2
DO46352
0 years, female, NA, stage:III, dead, 677 days
3220.6
DO46388
0 years, female, NA, stage:III, dead, 413 days
3118.5
DO46374
0 years, female, NA, stage:III, dead, 1409 days
3097.8
DO46392
0 years, female, NA, stage:III, dead, 628 days
3058.8
DO46346
0 years, female, NA, stage:III, dead, 1187 days
3049.1
DO46334
0 years, female, NA, stage:III, dead, 496 days
2917.8
DO46326
0 years, female, NA, stage:III, dead, 701 days
2839.2
DO46597
0 years, female, NA, stage:III, dead, 393 days
2753.7
DO46358
0 years, female, NA, stage:III, dead, 423 days
2738.8
DO46340
0 years, female, NA, stage:III, dead, 616 days
2732.9
DO46364
0 years, female, NA, stage:III, dead, 806 days
2714.2
DO46370
0 years, female, NA, stage:III, dead, 1727 days
2706.3
DO46412
0 years, female, NA, stage:III, dead, 597 days
2670.2
DO46368
0 years, female, NA, stage:III, dead, 2879 days
2660.3
DO46350
0 years, female, NA, stage:III, dead, 886 days
2632.0
DO46376
0 years, female, NA, stage:III, dead, 1430 days
2494.1
DO46566
0 years, female, NA, stage:III, dead, 673 days
2493.9
DO46448
0 years, female, NA, stage:III, dead, 654 days
2473.7
DO46328
0 years, female, NA, stage:III, dead, 972 days
2466.2
DO46348
0 years, female, NA, stage:IV, dead, 287 days
2435.8
DO46606
0 years, female, NA, stage:III, alive, 804 days
2417.1
DO46408
0 years, female, NA, stage:III, dead, 489 days
2382.7
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
2341.4
DO46336
0 years, female, NA, stage:IV, dead, 664 days
2322.3
DO46538
0 years, female, NA, stage:III, dead, 1527 days
2314.7
DO46327
0 years, female, NA, stage:III, dead, 184 days
2262.0
DO46432
0 years, female, NA, stage:III, alive, 2218 days
2205.0
DO46386
0 years, female, NA, stage:III, dead, 1162 days
2188.4
DO46330
0 years, female, NA, stage:III, dead, 684 days
2182.5
DO46396
0 years, female, NA, stage:III, dead, 583 days
2131.4
DO46533
0 years, female, NA, stage:III, alive, 3667 days
2121.9
DO46493
0 years, female, NA, stage:IV, alive, 839 days
2113.0
DO46528
0 years, female, NA, stage:III, alive, 6139 days
2053.6
DO46436
0 years, female, NA, stage:III, alive, 3193 days
2042.9
DO46372
0 years, female, NA, stage:III, dead, 1326 days
2042.9
DO46602
0 years, female, NA, stage:III, dead, 205 days
2028.1
DO46560
0 years, female, NA, stage:IV, dead, 286 days
2000.4
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
1917.4
DO46404
0 years, female, NA, stage:III, dead, 690 days
1877.1
DO46378
0 years, female, NA, stage:III, alive, 843 days
1848.9
DO46325
0 years, female, NA, stage:III, dead, 477 days
1814.8
DO46508
0 years, female, NA, stage:III, dead, 2101 days
1783.7
DO46468
0 years, female, NA, stage:III, alive, 2776 days
1765.5
DO46571
0 years, female, NA, stage:III, dead, 243 days
1695.4
DO46354
0 years, female, NA, stage:III, dead, 843 days
1668.6
DO46382
0 years, female, NA, stage:IV, dead, 311 days
1576.0
DO46344
0 years, female, NA, stage:III, dead, 642 days
1531.7
DO46332
0 years, female, NA, stage:III, dead, 689 days
1527.4
DO46329
0 years, female, NA, stage:III, dead, 1699 days
1500.4
DO46362
0 years, female, NA, stage:III, dead, 1639 days
1486.2
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
1398.8
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
1.0
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
0.9
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
0.9
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
0.9
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.9
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.8
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
0.8
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
0.7
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
0.7
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.7
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.6
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.6
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
0.6
1a10c200-3895-4648-b951-94f99f_D2
Tumor
0.6
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
0.6
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
0.6
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
0.6
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
0.6
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.6
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.6
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
0.6
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
0.5
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
0.5
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
0.5
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
0.5
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
0.5
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
0.5
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
0.5
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
0.5
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
0.5
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
0.5
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
0.5
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
0.4
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
0.4
161317f3-1a39-438e-af45-cd2502_D2
Tumor
0.4
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.4
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
0.4
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.4
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.4
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
0.4
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
0.4
2f901c90-617e-46da-9fac-d68369_D2
Tumor
0.4
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
0.4
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
0.4
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.3
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
0.3
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
0.3
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
0.3
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.3
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
0.3
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
0.3
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
0.2
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.2
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
0.2
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
0.2
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
0.1
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
0.1
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
0.1
340a3769-3031-41ae-bb08-a2f696_D2
Normal
0.1
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
0.1
e9d416e7-f661-400a-896e-388545_D2
Tumor
0.1
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.1
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
0.1
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.1
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.1
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
0.0
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
0.0
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.0
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
0.0
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
0.0
15524912-685a-47ce-a824-567848_D2
Tumor
-0.1
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.1
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-0.1
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.1
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.1
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
-0.1
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-0.1
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-0.2
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.2
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-0.2
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-0.2
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-0.2
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-0.3
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-0.3
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-0.3
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-0.3
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.4
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
-0.4
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-0.4
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-0.4
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-0.4
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
-0.5
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-0.5
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-0.5
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.5
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-0.5
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.5
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-0.5
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.5
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.5
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-0.6
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-0.6
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.8
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.8
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-0.8
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.9
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-1.0
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-1.3
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.