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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
26.8
nTPM
FANTOM5:
25.3
Scaled Tags Per Million
Pig:
7.2
nTPM
SPINAL CORD - Annotated protein expression
Pending normal tissue analysis
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.8
Sample id
Sample description
nTPM
Cervical spinal cord, central gray nTPM: 26.8
2565
Male, age 75, midline
31.8
1981
Female, age 72, midline
28.4
2816
Male, age 47, midline
24.8
2194
Female, age 79, both hemispheres
24.6
2048
Male, age 55, midline
24.3
Cervical spinal cord, dorsal horn nTPM: 24.5
2173
Female, age 72, unknown
27.3
2296
Male, age 66, both hemispheres
27.3
2069
Male, age 47, both hemispheres
25.8
1877
Male, age 55, unknown
24.1
2721
Male, age 90, both hemispheres
22.4
2297
Male, age 75, both hemispheres
20.1
Cervical spinal cord, ventral horn nTPM: 26.5
2098
Female, age 72, unknown
32.7
2809
Male, age 90, both hemispheres
28.0
2480
Male, age 75, both hemispheres
27.0
2295
Male, age 66, both hemispheres
26.6
2068
Male, age 55, unknown
24.8
2820
Female, age 79, both hemispheres
19.9
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
