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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
24.4
nTPM
FANTOM5:
22.4
Scaled Tags Per Million
Pig:
7.0
nTPM
Mouse:
41.9
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 21.4
2586
Male, age 75, left hemisphere
28.1
2828
Female, age 72, unknown
24.6
2019
Male, age 18, unknown
22.7
2411
Female, age 72, unknown
21.6
1827
Male, age 72, unknown
21.2
1870
Female, age 42, unknown
20.4
2666
Male, age 74, left hemisphere
20.1
1833
Male, age 53, unknown
19.3
1830
Male, age 51, unknown
18.4
2219
Male, age 76, both hemispheres
17.8
Dorsal raphe nucleus nTPM: 24.4
2298
Female, age 72, unknown
31.3
2016
Female, age 72, unknown
25.1
2047
Male, age 72, unknown
22.8
1828
Male, age 53, unknown
22.1
2750
Male, age 76, both hemispheres
20.3
Inferior colliculus nTPM: 20.1
2097
Female, age 72, unknown
23.7
1890
Male, age 53, unknown
19.0
1848
Female, age 42, unknown
18.9
2849
Male, age 72, unknown
18.8
Median raphe nucleus nTPM: 22.3
2220
Male, age 76, midline
22.3
Periaquaductal grey, anterior nTPM: 24.2
1795
Male, age 51, unknown
27.6
2502
Female, age 75, unknown
22.8
1947
Male, age 18, unknown
22.1
Periaquaductal grey, dorsal nTPM: 22.6
1840
Male, age 53, unknown
24.3
1831
Male, age 72, unknown
22.7
2464
Female, age 72, unknown
22.1
2850
Male, age 76, both hemispheres
21.3
Periaquaductal grey, lateral nTPM: 22.3
2140
Male, age 76, both hemispheres
22.9
2053
Male, age 18, unknown
22.6
2272
Male, age 74, both hemispheres
21.5
Pretectal area nTPM: 21.8
2273
Male, age 74, both hemispheres
26.9
2316
Male, age 76, right hemisphere
24.4
2667
Female, age 75, unknown
24.4
2224
Female, age 72, unknown
22.8
2825
Male, age 18, unknown
22.1
2007
Male, age 72, unknown
21.4
1816
Male, age 51, unknown
20.7
2407
Male, age 75, both hemispheres
20.7
1944
Female, age 72, unknown
19.8
1815
Male, age 53, unknown
19.3
1817
Female, age 42, unknown
17.4
Red nucleus nTPM: 20.2
2503
Female, age 72, unknown
21.9
1954
Female, age 42, unknown
21.5
2227
Male, age 72, unknown
21.5
2584
Male, age 75, left hemisphere
21.5
2769
Male, age 72, unknown
21.2
2725
Female, age 75, unknown
21.1
1904
Male, age 53, unknown
21.0
2588
Male, age 74, left hemisphere
19.8
1821
Female, age 72, unknown
19.6
2785
Male, age 18, unknown
19.0
1865
Male, age 51, unknown
17.5
2823
Male, age 76, right hemisphere
17.3
Substantia nigra nTPM: 19.3
1851
Male, age 51, unknown
21.5
2583
Male, age 75, right hemisphere
21.4
2665
Male, age 74, both hemispheres
20.5
1916
Female, age 42, unknown
19.6
2699
Male, age 18, unknown
19.4
1941
Male, age 53, unknown
19.2
2241
Male, age 72, unknown
19.0
1889
Female, age 72, unknown
18.6
2590
Female, age 75, unknown
18.3
2409
Female, age 72, unknown
15.4
Superior colliculus nTPM: 21.6
2664
Male, age 75, both hemispheres
27.4
1796
Male, age 53, unknown
23.8
2261
Male, age 18, unknown
22.2
1995
Male, age 72, unknown
22.0
2087
Female, age 72, unknown
21.8
2587
Male, age 74, left hemisphere
21.3
2668
Female, age 75, unknown
20.2
1913
Female, age 42, unknown
20.1
1839
Male, age 51, unknown
19.8
1895
Male, age 76, right hemisphere
16.9
Ventral tegmental area nTPM: 21.5
1942
Male, age 51, unknown
24.9
2021
Male, age 53, unknown
24.2
1915
Female, age 42, unknown
22.2
2223
Female, age 72, unknown
20.1
2410
Female, age 72, unknown
19.0
2218
Male, age 76, both hemispheres
18.6
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 41.9
Samples: 4
Max nTPM: 45.8
Min nTPM: 38.5
Sample A
Male
44.1
Sample B
Male
38.5
Sample C
Female
39.1
Sample D
Female
45.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
