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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
245.8
nTPM
FANTOM5:
165.1
Scaled Tags Per Million
Pig:
55.4
nTPM
Mouse:
46.2
nTPM
Allen mouse:
17.0
Expression energy
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
245.8
Sample id
Sample description
nTPM
Amygdala nTPM: 193.6
2514
Male, age 75, right hemisphere
224.1
1987
Female, age 91, left hemisphere
207.1
2814
Male, age 76, right hemisphere
199.3
2695
Female, age 67, right hemisphere
177.9
2517
Female, age 94, left hemisphere
159.8
Basal amygdala nTPM: 151.0
1955
Male, age 76, both hemispheres
203.4
2243
Female, age 91, right hemisphere
172.7
2110
Male, age 80, left hemisphere
158.4
2609
Male, age 75, right hemisphere
131.8
2685
Female, age 94, left hemisphere
125.3
2827
Female, age 67, right hemisphere
114.4
Central amygdala nTPM: 245.8
2515
Male, age 75, right hemisphere
474.7
1905
Male, age 76, both hemispheres
227.5
2826
Female, age 94, left hemisphere
184.6
2239
Male, age 80, left hemisphere
171.4
2701
Female, age 91, right hemisphere
170.7
Corticomedial amygdala nTPM: 168.5
2242
Female, age 91, right hemisphere
214.2
2240
Male, age 76, both hemispheres
187.8
2428
Male, age 75, right hemisphere
186.8
2829
Male, age 80, left hemisphere
151.1
2535
Female, age 67, right hemisphere
147.5
2429
Female, age 94, left hemisphere
123.3
Lateral amygdala nTPM: 168.5
2256
Male, age 80, left hemisphere
212.4
1883
Male, age 76, both hemispheres
182.3
2255
Female, age 91, right hemisphere
177.1
2534
Female, age 94, left hemisphere
166.6
2516
Male, age 75, right hemisphere
137.4
2830
Female, age 67, right hemisphere
135.0
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 46.2
Samples: 4
Max nTPM: 50.9
Min nTPM: 42.8
Sample A
Male
46.8
Sample B
Male
42.8
Sample C
Female
50.9
Sample D
Female
44.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
