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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
83.2
nTPM
HPA Brain:
257.2
nTPM
GTEx:
83.2
nTPM
FANTOM5:
27.2
Scaled Tags Per Million
Pig:
753.9
nTPM
Mouse:
300.3
nTPM
Allen mouse:
13.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
257.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 190.5
2019
Male, age 18, unknown
431.4
2219
Male, age 76, both hemispheres
239.1
2666
Male, age 74, left hemisphere
191.6
2411
Female, age 72, unknown
180.8
1827
Male, age 72, unknown
176.0
1870
Female, age 42, unknown
156.3
2586
Male, age 75, left hemisphere
144.7
2828
Female, age 72, unknown
130.9
1830
Male, age 51, unknown
129.7
1833
Male, age 53, unknown
125.0
Dorsal raphe nucleus nTPM: 238.0
1828
Male, age 53, unknown
439.6
2047
Male, age 72, unknown
261.8
2750
Male, age 76, both hemispheres
189.8
2298
Female, age 72, unknown
181.5
2016
Female, age 72, unknown
117.3
Inferior colliculus nTPM: 173.7
2097
Female, age 72, unknown
200.6
1890
Male, age 53, unknown
190.1
1848
Female, age 42, unknown
187.6
2849
Male, age 72, unknown
116.4
Median raphe nucleus nTPM: 198.1
2220
Male, age 76, midline
198.1
Periaquaductal grey, anterior nTPM: 171.7
2502
Female, age 75, unknown
201.7
1795
Male, age 51, unknown
189.1
1947
Male, age 18, unknown
124.3
Periaquaductal grey, dorsal nTPM: 119.3
1831
Male, age 72, unknown
157.8
2464
Female, age 72, unknown
134.8
2850
Male, age 76, both hemispheres
98.8
1840
Male, age 53, unknown
85.7
Periaquaductal grey, lateral nTPM: 94.9
2053
Male, age 18, unknown
104.2
2272
Male, age 74, both hemispheres
97.9
2140
Male, age 76, both hemispheres
82.6
Pretectal area nTPM: 257.2
1944
Female, age 72, unknown
500.2
1817
Female, age 42, unknown
453.2
1816
Male, age 51, unknown
407.0
2007
Male, age 72, unknown
388.7
2667
Female, age 75, unknown
296.4
1815
Male, age 53, unknown
229.8
2316
Male, age 76, right hemisphere
134.6
2224
Female, age 72, unknown
129.5
2825
Male, age 18, unknown
111.6
2407
Male, age 75, both hemispheres
95.4
2273
Male, age 74, both hemispheres
82.3
Red nucleus nTPM: 247.3
1821
Female, age 72, unknown
421.9
2785
Male, age 18, unknown
338.1
2503
Female, age 72, unknown
292.9
1954
Female, age 42, unknown
276.8
2823
Male, age 76, right hemisphere
273.4
1865
Male, age 51, unknown
244.2
2588
Male, age 74, left hemisphere
230.4
2227
Male, age 72, unknown
216.1
2769
Male, age 72, unknown
213.0
1904
Male, age 53, unknown
201.2
2584
Male, age 75, left hemisphere
150.2
2725
Female, age 75, unknown
109.1
Substantia nigra nTPM: 236.5
1941
Male, age 53, unknown
397.5
1889
Female, age 72, unknown
358.5
1916
Female, age 42, unknown
316.2
2665
Male, age 74, both hemispheres
298.2
1851
Male, age 51, unknown
232.8
2409
Female, age 72, unknown
215.3
2241
Male, age 72, unknown
191.8
2699
Male, age 18, unknown
140.5
2590
Female, age 75, unknown
108.2
2583
Male, age 75, right hemisphere
106.4
Superior colliculus nTPM: 200.5
2668
Female, age 75, unknown
446.0
2087
Female, age 72, unknown
342.1
1895
Male, age 76, right hemisphere
259.9
2261
Male, age 18, unknown
177.8
1913
Female, age 42, unknown
172.6
1796
Male, age 53, unknown
156.2
1839
Male, age 51, unknown
134.5
1995
Male, age 72, unknown
113.7
2664
Male, age 75, both hemispheres
104.7
2587
Male, age 74, left hemisphere
97.3
Ventral tegmental area nTPM: 211.4
2218
Male, age 76, both hemispheres
304.3
2410
Female, age 72, unknown
276.6
1915
Female, age 42, unknown
226.3
2223
Female, age 72, unknown
206.7
1942
Male, age 51, unknown
145.7
2021
Male, age 53, unknown
108.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
83.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 83.2
Samples: 139
Max nTPM: 816.5
Min nTPM: 0.5
Std nTPM: 127.9
Median nTPM: 28.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
816.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
762.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
399.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
372.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
356.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
346.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
320.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
289.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
285.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
282.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
270.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
268.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
258.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
256.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
244.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
241.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
221.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
212.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
211.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
208.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
206.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
204.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
180.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
179.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
165.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
163.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
160.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
159.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
141.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
136.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
131.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
131.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
127.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
125.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
123.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
117.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
108.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
104.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
99.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
90.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
83.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
78.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
77.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
75.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
72.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
68.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
68.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
63.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
61.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
56.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
52.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
52.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
52.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
50.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
48.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
43.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
43.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
42.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
41.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
38.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
37.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
37.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
36.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
32.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
31.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
30.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
29.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
29.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
29.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
23.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
23.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
22.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
21.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
19.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
18.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
17.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
16.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
16.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
16.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
15.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
14.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
13.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
13.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
13.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
12.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
12.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
11.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
10.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
10.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
10.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
9.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
9.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
8.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
7.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
7.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
6.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
6.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
6.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
6.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
6.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
6.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
5.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
5.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
5.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
5.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
4.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
4.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
4.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
4.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
4.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
3.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
3.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
300.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 300.3
Samples: 4
Max nTPM: 309.9
Min nTPM: 291.3
Sample A
Male
292.0
Sample B
Male
309.9
Sample C
Female
307.9
Sample D
Female
291.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.