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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
45.3
nTPM
HPA Brain:
328.0
nTPM
GTEx:
45.3
nTPM
FANTOM5:
472.7
Scaled Tags Per Million
Pig:
350.2
nTPM
Mouse:
247.7
nTPM
Allen mouse:
13.7
Expression energy
HIPPOCAMPUS - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA014850
Glial cells
Not detected
Immunohistochemical staining of human hippocampus shows strong positivity in neuronal projections.
100 ฮผm
Neuronal cells
Not detected
Neuronal projections
High
Synapses
Not detected
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
328.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 193.6
1898
Male, age 80, left hemisphere
385.3
2621
Female, age 67, right hemisphere
206.9
1855
Male, age 76, left hemisphere
167.6
2529
Female, age 94, left hemisphere
155.2
2148
Female, age 91, left hemisphere
124.3
1911
Female, age 85, right hemisphere
122.5
Dentate gyrus nTPM: 210.2
2530
Female, age 94, left hemisphere
316.9
1927
Female, age 91, both hemispheres
210.6
2246
Female, age 85, both hemispheres
204.5
2010
Male, age 76, both hemispheres
190.1
2528
Male, age 74, both hemispheres
175.0
2531
Female, age 67, both hemispheres
164.3
Entorhinal gyrus nTPM: 221.1
2613
Female, age 94, left hemisphere
309.9
2764
Male, age 80, right hemisphere
289.3
1938
Female, age 85, left hemisphere
211.8
1787
Male, age 76, left hemisphere
209.9
2686
Male, age 75, right hemisphere
198.7
2117
Female, age 91, right hemisphere
106.7
Hippocampus, CA1 nTPM: 232.7
2749
Male, age 80, left hemisphere
469.0
2527
Male, age 74, both hemispheres
224.5
1873
Female, age 85, both hemispheres
204.0
2082
Female, age 91, right hemisphere
147.0
2045
Male, age 76, both hemispheres
119.0
Hippocampus, CA2 nTPM: 267.3
2437
Female, age 94, left hemisphere
431.5
1892
Male, age 76, both hemispheres
400.3
1963
Male, age 80, left hemisphere
256.9
1940
Female, age 85, left hemisphere
191.1
2249
Male, age 74, both hemispheres
175.0
2113
Female, age 91, right hemisphere
149.1
Hippocampus, CA3 nTPM: 233.7
2137
Male, age 80, left hemisphere
384.5
1867
Male, age 76, both hemispheres
312.3
1891
Female, age 85, both hemispheres
211.9
2861
Female, age 67, both hemispheres
180.3
2620
Female, age 94, left hemisphere
159.4
2436
Male, age 74, both hemispheres
153.7
Parahippocampal cortex nTPM: 252.5
2245
Female, age 91, both hemispheres
386.1
1850
Male, age 80, both hemispheres
332.1
2250
Female, age 67, right hemisphere
302.5
1990
Female, age 91, right hemisphere
292.7
2693
Female, age 94, both hemispheres
270.9
2622
Female, age 67, right hemisphere
232.4
1933
Female, age 85, both hemispheres
219.8
2532
Female, age 72, left hemisphere
194.0
2018
Male, age 76, both hemispheres
152.8
2692
Male, age 74, both hemispheres
141.4
Perirhinal gyrus nTPM: 328.0
1847
Female, age 91, left hemisphere
377.7
2521
Female, age 94, right hemisphere
375.5
1794
Male, age 80, right hemisphere
348.2
1841
Female, age 85, right hemisphere
312.5
2848
Male, age 76, right hemisphere
226.0
Subiculum nTPM: 269.2
2438
Female, age 94, left hemisphere
549.8
1901
Male, age 80, both hemispheres
315.1
1977
Female, age 85, both hemispheres
278.5
2619
Male, age 74, both hemispheres
248.7
2042
Male, age 76, both hemispheres
133.5
2729
Female, age 91, right hemisphere
89.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 45.3
Samples: 197
Max nTPM: 276.4
Min nTPM: 0.9
Std nTPM: 51.9
Median nTPM: 25.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
276.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
270.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
200.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
196.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
195.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
188.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
184.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
172.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
163.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
163.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
162.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
152.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
150.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
145.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
138.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
130.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
129.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
126.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
123.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
123.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
120.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
112.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
108.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
107.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
106.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
96.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
94.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
92.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
91.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
91.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
89.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
89.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
88.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
86.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
85.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
83.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
82.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
81.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
81.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
79.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
77.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
76.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
75.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
74.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
74.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
73.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
72.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
68.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
68.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
63.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
60.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
60.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
60.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
58.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
58.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
55.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
54.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
53.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
49.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
47.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
46.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
44.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
44.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
44.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
43.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
43.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
41.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
40.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
40.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
38.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
38.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
37.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
37.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
35.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
33.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
32.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
32.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
32.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
32.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
32.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
31.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
31.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
30.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
29.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
29.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
29.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
29.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
28.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
28.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
28.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
28.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
27.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
27.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
26.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
26.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
26.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
26.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
26.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
25.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
24.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
24.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
24.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
23.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
23.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
23.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
23.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
23.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
23.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
23.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
22.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
22.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
21.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
19.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
19.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
18.7
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
18.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
18.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
18.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
17.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
17.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
17.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
17.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
16.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
16.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
16.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
16.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
16.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
16.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
16.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
15.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
14.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
14.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
13.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
13.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
13.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
13.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
13.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
12.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
12.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
12.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
11.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
11.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
11.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
10.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
10.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
10.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
9.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
8.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
8.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
8.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
7.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
7.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
7.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
7.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
6.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
6.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
6.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
6.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
6.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
6.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
6.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
6.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
5.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
5.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
5.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
5.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
5.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
5.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
5.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
5.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
5.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
5.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
5.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
4.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
4.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
4.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
4.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
4.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
4.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
4.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
3.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
3.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
3.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
3.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
3.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
3.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
3.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
3.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
2.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
2.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
2.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
2.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
2.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
2.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
0.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
247.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 175.7
Samples: 4
Max nTPM: 196.4
Min nTPM: 142.2
Sample A
Male
195.4
Sample B
Male
196.4
Sample C
Female
168.7
Sample D
Female
142.2
Hippocampal formation nTPM: 247.7
Samples: 4
Max nTPM: 294.1
Min nTPM: 210.9
Sample A
Male
210.9
Sample B
Male
252.1
Sample C
Female
294.1
Sample D
Female
233.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.