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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
221.6
Sample id
Sample description
nTPM
Amygdala nTPM: 206.8
2814
Male, age 76, right hemisphere
550.1
2517
Female, age 94, left hemisphere
159.8
1987
Female, age 91, left hemisphere
134.2
2514
Male, age 75, right hemisphere
98.6
2695
Female, age 67, right hemisphere
91.2
Basal amygdala nTPM: 213.7
1955
Male, age 76, both hemispheres
300.9
2243
Female, age 91, right hemisphere
281.0
2110
Male, age 80, left hemisphere
249.7
2685
Female, age 94, left hemisphere
228.3
2827
Female, age 67, right hemisphere
149.9
2609
Male, age 75, right hemisphere
72.2
Central amygdala nTPM: 221.6
1905
Male, age 76, both hemispheres
475.4
2239
Male, age 80, left hemisphere
232.9
2826
Female, age 94, left hemisphere
178.6
2701
Female, age 91, right hemisphere
140.1
2515
Male, age 75, right hemisphere
81.2
Corticomedial amygdala nTPM: 213.7
2240
Male, age 76, both hemispheres
310.0
2829
Male, age 80, left hemisphere
233.8
2242
Female, age 91, right hemisphere
232.6
2535
Female, age 67, right hemisphere
228.1
2429
Female, age 94, left hemisphere
192.8
2428
Male, age 75, right hemisphere
85.1
Lateral amygdala nTPM: 211.6
1883
Male, age 76, both hemispheres
527.4
2534
Female, age 94, left hemisphere
318.1
2255
Female, age 91, right hemisphere
143.9
2256
Male, age 80, left hemisphere
137.4
2830
Female, age 67, right hemisphere
75.1
2516
Male, age 75, right hemisphere
67.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 81.2
Samples: 181
Max nTPM: 304.0
Min nTPM: 6.7
Std nTPM: 59.8
Median nTPM: 60.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
304.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
290.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
252.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
247.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
239.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
233.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
230.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
228.2
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
189.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
187.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
186.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
185.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
176.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
173.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
170.2
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
160.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
159.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
158.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
157.9
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
156.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
155.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
153.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
153.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
152.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
151.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
147.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
144.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
143.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
139.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
139.2
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
138.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
134.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
134.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
133.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
131.7
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
130.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
128.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
127.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
127.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
125.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
123.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
120.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
119.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
117.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
115.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
114.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
114.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
113.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
109.6
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
109.5
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
108.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
108.1
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
106.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
103.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
103.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
103.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
100.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
100.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
99.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
99.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
98.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
98.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
98.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
97.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
96.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
96.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
94.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
93.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
93.3
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
91.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
90.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
90.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
88.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
88.1
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
84.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
81.8
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
81.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
80.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
77.7
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
76.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
76.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
73.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
69.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
65.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
64.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
62.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
62.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
61.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
61.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
60.8
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
60.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
59.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
59.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
58.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
58.2
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
57.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
56.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
56.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
56.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
55.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
55.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
55.5
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
55.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
54.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
51.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
51.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
51.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
51.1
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
50.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
49.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
47.4
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
47.3
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
46.1
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
46.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
45.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
44.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
44.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
43.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
42.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
42.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
42.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
42.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
41.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
41.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
40.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
40.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
40.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
39.3
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
39.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
38.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
37.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
35.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
33.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
33.0
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
32.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
32.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
32.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
32.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
32.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
31.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
30.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
29.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
29.9
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
29.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
29.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
29.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
29.1
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
28.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
28.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
27.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
27.2
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
27.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
26.1
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
26.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
26.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
25.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
23.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
23.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
23.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
22.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
22.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
22.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
21.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
21.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
20.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
18.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
18.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
18.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
17.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
16.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
16.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
16.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
15.8
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
15.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
14.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
13.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
13.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
12.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
12.0
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
10.6
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
6.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.7
Pig sample
Sample description
nTPM
Amygdala nTPM: 169.7
Samples: 4
Max nTPM: 262.1
Min nTPM: 109.2
Sample A
Female
262.1
Sample B
Female
109.2
Sample C
Male
176.3
Sample D
Male
131.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
192.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 192.1
Samples: 4
Max nTPM: 218.4
Min nTPM: 175.8
Sample A
Male
194.8
Sample B
Male
179.2
Sample C
Female
218.4
Sample D
Female
175.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
