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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYFIP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
59.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
56.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
55.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
52.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
52.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYFIP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
70.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
141
Tumor
0.5
661
Tumor
0.5
724
Normal
0.4
343
Tumor
0.4
434
Normal
0.4
813
Tumor
0.4
617
Tumor
0.4
425
Tumor
0.4
192
Normal
0.4
171
Tumor
0.3
311
Tumor
0.3
814
Normal
0.3
124
Normal
0.3
185
Tumor
0.3
727
Tumor
0.3
383
Tumor
0.3
737
Tumor
0.3
213
Tumor
0.3
217
Tumor
0.3
126
Normal
0.3
135
Tumor
0.3
331
Tumor
0.3
851
Tumor
0.3
463
Tumor
0.3
147
Tumor
0.3
271
Tumor
0.3
218
Normal
0.3
161
Tumor
0.3
467
Tumor
0.3
815
Tumor
0.3
395
Tumor
0.2
297
Tumor
0.2
283
Tumor
0.2
231
Tumor
0.2
188
Normal
0.2
146
Normal
0.2
443
Tumor
0.2
384
Normal
0.2
536
Normal
0.2
385
Tumor
0.2
567
Tumor
0.2
341
Tumor
0.2
262
Normal
0.2
978
Normal
0.2
444
Normal
0.2
125
Tumor
0.2
344
Normal
0.2
641
Tumor
0.2
672
Normal
0.2
112
Tumor
0.2
268
Normal
0.2
368
Normal
0.2
211
Tumor
0.2
685
Tumor
0.2
461
Tumor
0.2
917
Tumor
0.2
447
Tumor
0.2
375
Tumor
0.2
352
Normal
0.2
224
Normal
0.2
415
Tumor
0.2
1015
Tumor
0.2
881
Tumor
0.2
563
Tumor
0.2
433
Tumor
0.2
863
Tumor
0.2
778
Normal
0.2
647
Tumor
0.2
455
Tumor
0.2
524
Normal
0.2
951
Tumor
0.1
498
Normal
0.1
387
Tumor
0.1
686
Normal
0.1
111
Normal
0.1
921
Tumor
0.1
852
Normal
0.1
952
Normal
0.1
983
Tumor
0.1
432
Normal
0.1
137
Tumor
0.1
627
Tumor
0.1
883
Tumor
0.1
1021
Tumor
0.1
313
Tumor
0.1
396
Normal
0.1
195
Tumor
0.1
478
Normal
0.1
332
Normal
0.1
221
Tumor
0.1
421
Tumor
0.1
713
Tumor
0.1
114
Normal
0.1
138
Normal
0.1
214
Normal
0.1
367
Tumor
0.1
984
Normal
0.1
744
Normal
0.1
977
Tumor
0.1
558
Normal
0.1
113
Tumor
0.1
354
Normal
0.1
1013
Tumor
0.1
663
Tumor
0.1
272
Normal
0.1
1028
Normal
0.1
423
Tumor
0.1
362
Normal
0.1
312
Normal
0.1
628
Normal
0.1
535
Tumor
0.1
492
Normal
0.1
376
Normal
0.1
954
Normal
0.1
477
Tumor
0.1
943
Tumor
0.1
392
Normal
0.1
716
Normal
0.1
451
Tumor
0.1
857
Tumor
0.1
573
Tumor
0.1
515
Tumor
0.1
136
Normal
0.1
817
Tumor
0.1
966
Normal
0.1
723
Tumor
0.1
557
Tumor
0.1
574
Normal
0.1
1031
Tumor
0.1
468
Normal
0.1
427
Tumor
0.1
914
Normal
0.1
824
Normal
0.1
913
Tumor
0.1
261
Tumor
0.1
738
Normal
0.1
487
Tumor
0.1
424
Normal
0.1
353
Tumor
0.1
414
Normal
0.1
642
Normal
0.1
818
Normal
0.1
777
Tumor
0.1
257
Tumor
0.1
1026
Normal
0.1
196
Normal
0.1
456
Normal
0.1
391
Tumor
0.1
861
Tumor
0.0
142
Normal
0.0
145
Tumor
0.0
911
Tumor
0.0
1044
Normal
0.0
366
Normal
0.0
426
Normal
0.0
435
Tumor
0.0
128
Normal
0.0
884
Normal
0.0
662
Normal
0.0
365
Tumor
0.0
284
Normal
0.0
358
Normal
0.0
191
Tumor
0.0
422
Normal
0.0
493
Tumor
0.0
162
Normal
0.0
874
Normal
0.0
386
Normal
0.0
925
Tumor
0.0
741
Tumor
0.0
956
Normal
0.0
696
Normal
0.0
866
Normal
0.0
445
Tumor
0.0
212
Normal
0.0
742
Normal
0.0
665
Tumor
0.0
528
Normal
0.0
755
Tumor
0.0
743
Tumor
0.0
786
Normal
0.0
816
Normal
0.0
1045
Tumor
0.0
616
Normal
0.0
666
Normal
0.0
878
Normal
0.0
721
Tumor
0.0
1016
Normal
0.0
436
Normal
0.0
172
Normal
0.0
568
Normal
0.0
298
Normal
0.0
955
Tumor
0.0
916
Normal
0.0
258
Normal
0.0
975
Tumor
0.0
471
Tumor
0.0
514
Normal
0.0
618
Normal
0.0
1046
Normal
0.0
277
Tumor
0.0
223
Tumor
0.0
525
Tumor
0.0
937
Tumor
0.0
873
Tumor
0.0
526
Normal
0.0
944
Normal
0.0
356
Normal
0.0
314
Normal
0.0
537
Tumor
0.0
1014
Normal
0.0
572
Normal
0.0
664
Normal
0.0
976
Normal
0.0
481
Tumor
0.0
357
Tumor
0.0
483
Tumor
0.0
516
Normal
0.0
953
Tumor
0.0
671
Tumor
0.0
232
Normal
0.0
728
Normal
0.0
497
Tumor
0.0
538
Normal
0.0
823
Tumor
0.0
464
Normal
0.0
412
Normal
0.0
636
Normal
0.0
148
Normal
0.0
327
Tumor
0.0
756
Normal
0.0
413
Tumor
0.0
648
Normal
0.0
187
Tumor
0.0
342
Normal
0.0
448
Normal
0.0
722
Normal
0.0
938
Normal
0.0
564
Normal
0.0
388
Normal
0.0
132
Normal
0.0
267
Tumor
0.0
286
Normal
-0.1
518
Normal
-0.1
363
Tumor
-0.1
1042
Normal
-0.1
1022
Normal
-0.1
466
Normal
-0.1
127
Tumor
-0.1
882
Normal
-0.1
867
Tumor
-0.1
488
Normal
-0.1
474
Normal
-0.1
714
Normal
-0.1
186
Normal
-0.1
968
Normal
-0.1
785
Tumor
-0.1
222
Normal
-0.1
394
Normal
-0.1
862
Normal
-0.1
1032
Normal
-0.1
364
Normal
-0.1
462
Normal
-0.1
428
Normal
-0.1
431
Tumor
-0.1
923
Tumor
-0.1
858
Normal
-0.1
715
Tumor
-0.1
864
Normal
-0.1
746
Normal
-0.1
922
Normal
-0.1
491
Tumor
-0.1
452
Normal
-0.1
912
Normal
-0.1
926
Normal
-0.1
918
Normal
-0.1
228
Normal
-0.1
416
Normal
-0.1
446
Normal
-0.1
865
Tumor
-0.1
982
Normal
-0.1
958
Normal
-0.1
964
Normal
-0.1
924
Normal
-0.1
697
Tumor
-0.1
494
Normal
-0.1
868
Normal
-0.1
131
Tumor
-0.1
278
Normal
-0.1
472
Normal
-0.1
533
Tumor
-0.1
695
Tumor
-0.1
615
Tumor
-0.1
482
Normal
-0.1
571
Tumor
-0.1
355
Tumor
-0.1
513
Tumor
-0.1
698
Normal
-0.1
227
Tumor
-0.2
527
Tumor
-0.2
1041
Tumor
-0.2
328
Normal
-0.2
963
Tumor
-0.2
285
Tumor
-0.2
517
Tumor
-0.2
877
Tumor
-0.2
546
Normal
-0.2
361
Tumor
-0.2
1025
Tumor
-0.2
1027
Tumor
-0.2
554
Normal
-0.2
635
Tumor
-0.2
534
Normal
-0.2
484
Normal
-0.2
123
Tumor
-0.2
351
Tumor
-0.2
915
Tumor
-0.2
981
Tumor
-0.2
545
Tumor
-0.3
1043
Tumor
-0.3
411
Tumor
-0.3
745
Tumor
-0.3
957
Tumor
-0.3
967
Tumor
-0.3
965
Tumor
-0.3
523
Tumor
-0.4
553
Tumor
-0.4
473
Tumor
-0.4
393
Tumor
-0.4
465
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
