MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.1 nTPM
HPA Brain:60.6 nTPM
GTEx:74.1 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:25.1 nTPM
Mouse:177.1 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.6
1827 Male, age 72, unknown 60.0
2019 Male, age 18, unknown 57.4
2411 Female, age 72, unknown 52.8
1870 Female, age 42, unknown 50.4
1833 Male, age 53, unknown 50.3
2828 Female, age 72, unknown 48.3
2666 Male, age 74, left hemisphere 46.7
1830 Male, age 51, unknown 45.3
2219 Male, age 76, both hemispheres 45.0
2586 Male, age 75, left hemisphere 39.3
Dorsal raphe nucleus
nTPM: 53.2
1828 Male, age 53, unknown 58.4
2298 Female, age 72, unknown 56.8
2047 Male, age 72, unknown 53.3
2750 Male, age 76, both hemispheres 48.7
2016 Female, age 72, unknown 48.5
Inferior colliculus
nTPM: 53.8
1848 Female, age 42, unknown 55.2
2097 Female, age 72, unknown 55.0
2849 Male, age 72, unknown 54.1
1890 Male, age 53, unknown 50.9
Median raphe nucleus
nTPM: 55.4
2220 Male, age 76, midline 55.4
Periaquaductal grey, anterior
nTPM: 55.2
1947 Male, age 18, unknown 57.5
1795 Male, age 51, unknown 57.0
2502 Female, age 75, unknown 51.2
Periaquaductal grey, dorsal
nTPM: 51.7
2850 Male, age 76, both hemispheres 57.5
1840 Male, age 53, unknown 51.8
1831 Male, age 72, unknown 49.9
2464 Female, age 72, unknown 47.6
Periaquaductal grey, lateral
nTPM: 55.4
2272 Male, age 74, both hemispheres 62.8
2053 Male, age 18, unknown 52.0
2140 Male, age 76, both hemispheres 51.5
Pretectal area
nTPM: 60.6
1816 Male, age 51, unknown 71.8
1817 Female, age 42, unknown 71.3
2007 Male, age 72, unknown 70.0
1944 Female, age 72, unknown 64.8
2667 Female, age 75, unknown 62.6
1815 Male, age 53, unknown 60.5
2273 Male, age 74, both hemispheres 59.4
2224 Female, age 72, unknown 55.3
2407 Male, age 75, both hemispheres 51.6
2825 Male, age 18, unknown 50.7
2316 Male, age 76, right hemisphere 48.8
Red nucleus
nTPM: 50.1
2725 Female, age 75, unknown 56.5
1821 Female, age 72, unknown 56.3
2785 Male, age 18, unknown 55.3
2588 Male, age 74, left hemisphere 51.4
1954 Female, age 42, unknown 49.8
2584 Male, age 75, left hemisphere 49.5
2503 Female, age 72, unknown 49.2
2823 Male, age 76, right hemisphere 49.0
2769 Male, age 72, unknown 47.9
2227 Male, age 72, unknown 46.7
1865 Male, age 51, unknown 45.9
1904 Male, age 53, unknown 43.1
Substantia nigra
nTPM: 53.6
1889 Female, age 72, unknown 61.3
1916 Female, age 42, unknown 60.1
1941 Male, age 53, unknown 59.5
2409 Female, age 72, unknown 59.3
2665 Male, age 74, both hemispheres 55.0
1851 Male, age 51, unknown 53.4
2241 Male, age 72, unknown 50.6
2590 Female, age 75, unknown 49.4
2699 Male, age 18, unknown 46.3
2583 Male, age 75, right hemisphere 40.8
Superior colliculus
nTPM: 52.3
2087 Female, age 72, unknown 59.0
2261 Male, age 18, unknown 55.9
1895 Male, age 76, right hemisphere 55.7
2587 Male, age 74, left hemisphere 53.7
1839 Male, age 51, unknown 53.0
1796 Male, age 53, unknown 52.5
2664 Male, age 75, both hemispheres 52.0
2668 Female, age 75, unknown 51.3
1913 Female, age 42, unknown 46.0
1995 Male, age 72, unknown 43.7
Ventral tegmental area
nTPM: 49.5
2410 Female, age 72, unknown 53.0
2218 Male, age 76, both hemispheres 52.7
1915 Female, age 42, unknown 51.1
2021 Male, age 53, unknown 47.1
2223 Female, age 72, unknown 46.8
1942 Male, age 51, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.1
Samples: 139

Max nTPM: 119.4
Min nTPM: 44.0
Std nTPM: 15.4
Median nTPM: 72.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 119.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 119.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 113.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 111.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 107.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 107.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 105.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 103.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 102.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 99.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 99.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.3
FF:10158-103A5 76 years, female 66.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.0
Samples: 4

Max nTPM: 27.8
Min nTPM: 21.2
Sample A Female 27.8
Sample B Female 22.6
Sample C Male 24.5
Sample D Male 21.2
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 27.6
Min nTPM: 21.1
Sample A Female 26.7
Sample B Female 27.6
Sample C Male 22.2
Sample D Male 21.1
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 25.8
Min nTPM: 23.9
Sample B Female 23.9
Sample C Male 24.4
Sample D Male 25.8
Superior colliculi
nTPM: 25.1
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.5
Sample A Female 28.8
Sample B Female 26.4
Sample C Male 22.8
Sample D Male 22.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 177.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 177.1
Samples: 4

Max nTPM: 186.9
Min nTPM: 168.7
Sample A Male 176.1
Sample B Male 168.7
Sample C Female 176.7
Sample D Female 186.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
68744803 Antisense, RP_050208_01_F09, Mouse strain C57BL/6J (56 days, male) 2.6

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