HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.1 nTPM
HPA Brain:60.2 nTPM
GTEx:72.1 nTPM
FANTOM5:84.3 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:187.3 nTPM
Allen mouse:5.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 60.2
Sample id Sample description nTPM
Hippocampus
nTPM: 50.7
1898 Male, age 80, left hemisphere 55.7
2621 Female, age 67, right hemisphere 53.5
2529 Female, age 94, left hemisphere 51.4
2148 Female, age 91, left hemisphere 50.3
1855 Male, age 76, left hemisphere 47.9
1911 Female, age 85, right hemisphere 45.5
Dentate gyrus
nTPM: 50.9
1927 Female, age 91, both hemispheres 58.9
2010 Male, age 76, both hemispheres 51.4
2528 Male, age 74, both hemispheres 51.2
2246 Female, age 85, both hemispheres 49.7
2530 Female, age 94, left hemisphere 48.6
2531 Female, age 67, both hemispheres 45.7
Entorhinal gyrus
nTPM: 51.6
1787 Male, age 76, left hemisphere 57.3
2764 Male, age 80, right hemisphere 55.6
1938 Female, age 85, left hemisphere 53.0
2686 Male, age 75, right hemisphere 50.2
2613 Female, age 94, left hemisphere 49.3
2117 Female, age 91, right hemisphere 44.0
Hippocampus, CA1
nTPM: 52.2
2749 Male, age 80, left hemisphere 60.6
2045 Male, age 76, both hemispheres 53.5
2527 Male, age 74, both hemispheres 50.4
1873 Female, age 85, both hemispheres 49.5
2082 Female, age 91, right hemisphere 47.2
Hippocampus, CA2
nTPM: 51.5
2249 Male, age 74, both hemispheres 59.5
1892 Male, age 76, both hemispheres 59.1
2437 Female, age 94, left hemisphere 49.3
2113 Female, age 91, right hemisphere 47.4
1963 Male, age 80, left hemisphere 46.9
1940 Female, age 85, left hemisphere 46.8
Hippocampus, CA3
nTPM: 52.5
2436 Male, age 74, both hemispheres 65.4
2137 Male, age 80, left hemisphere 54.6
1867 Male, age 76, both hemispheres 54.4
2620 Female, age 94, left hemisphere 54.1
1891 Female, age 85, both hemispheres 43.4
2861 Female, age 67, both hemispheres 43.0
Parahippocampal cortex
nTPM: 55.2
1850 Male, age 80, both hemispheres 64.2
2250 Female, age 67, right hemisphere 58.0
1933 Female, age 85, both hemispheres 57.2
2532 Female, age 72, left hemisphere 56.5
2693 Female, age 94, both hemispheres 55.6
2245 Female, age 91, both hemispheres 54.9
1990 Female, age 91, right hemisphere 52.8
2622 Female, age 67, right hemisphere 51.4
2692 Male, age 74, both hemispheres 51.0
2018 Male, age 76, both hemispheres 50.6
Perirhinal gyrus
nTPM: 60.2
1847 Female, age 91, left hemisphere 66.0
1841 Female, age 85, right hemisphere 62.3
1794 Male, age 80, right hemisphere 61.9
2521 Female, age 94, right hemisphere 55.4
2848 Male, age 76, right hemisphere 55.2
Subiculum
nTPM: 47.5
1977 Female, age 85, both hemispheres 54.6
2619 Male, age 74, both hemispheres 53.6
1901 Male, age 80, both hemispheres 45.9
2729 Female, age 91, right hemisphere 44.7
2042 Male, age 76, both hemispheres 44.3
2438 Female, age 94, left hemisphere 41.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 72.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 72.1
Samples: 255

Max nTPM: 208.2
Min nTPM: 32.6
Std nTPM: 19.4
Median nTPM: 70.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 208.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 132.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 126.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 124.9
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 122.0
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 122.0
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 111.4
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 108.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 107.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 105.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 105.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 84.3
FF:10169-103B7 60 years, female 97.6
FF:10153-102I9 76 years, female 71.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 21.8
Pig sample Sample description nTPM
Subiculum
nTPM: 21.5
Samples: 4

Max nTPM: 23.4
Min nTPM: 19.8
Sample A Female 23.4
Sample B Female 19.8
Sample C Male 21.7
Sample D Male 21.0
Dorsal hippocampus
nTPM: 21.8
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.4
Sample A Female 23.1
Sample B Female 20.4
Sample C Male 24.2
Sample D Male 19.4
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 22.2
Min nTPM: 20.5
Sample A Female 20.7
Sample B Female 22.0
Sample C Male 22.2
Sample D Male 20.5
Ventral hippocampus
nTPM: 20.9
Samples: 4

Max nTPM: 22.0
Min nTPM: 19.3
Sample A Female 22.0
Sample B Female 19.3
Sample C Male 21.8
Sample D Male 20.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 187.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 165.6
Samples: 4

Max nTPM: 183.4
Min nTPM: 140.5
Sample A Male 158.7
Sample B Male 179.9
Sample C Female 183.4
Sample D Female 140.5
Hippocampal formation
nTPM: 187.3
Samples: 4

Max nTPM: 204.3
Min nTPM: 174.2
Sample A Male 204.3
Sample B Male 175.5
Sample C Female 195.2
Sample D Female 174.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
68744803 Antisense, RP_050208_01_F09, Mouse strain C57BL/6J (56 days, male) 5.5

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