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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRGAP2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRGAP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.3
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.0
715
Tumor
1.0
147
Tumor
0.9
724
Normal
0.9
313
Tumor
0.9
777
Tumor
0.9
351
Tumor
0.8
283
Tumor
0.7
865
Tumor
0.7
123
Tumor
0.7
877
Tumor
0.7
861
Tumor
0.6
863
Tumor
0.6
171
Tumor
0.6
1013
Tumor
0.6
463
Tumor
0.6
125
Tumor
0.6
257
Tumor
0.6
977
Tumor
0.6
737
Tumor
0.5
357
Tumor
0.5
375
Tumor
0.5
451
Tumor
0.5
943
Tumor
0.5
665
Tumor
0.5
491
Tumor
0.5
431
Tumor
0.5
965
Tumor
0.5
311
Tumor
0.5
383
Tumor
0.4
425
Tumor
0.4
911
Tumor
0.4
443
Tumor
0.4
343
Tumor
0.4
445
Tumor
0.4
137
Tumor
0.4
615
Tumor
0.3
647
Tumor
0.3
161
Tumor
0.3
661
Tumor
0.3
231
Tumor
0.3
917
Tumor
0.3
277
Tumor
0.3
697
Tumor
0.3
525
Tumor
0.3
415
Tumor
0.3
211
Tumor
0.3
663
Tumor
0.3
536
Normal
0.3
814
Normal
0.3
146
Normal
0.3
813
Tumor
0.3
478
Normal
0.2
136
Normal
0.2
141
Tumor
0.2
487
Tumor
0.2
434
Normal
0.2
261
Tumor
0.2
444
Normal
0.2
327
Tumor
0.2
355
Tumor
0.2
563
Tumor
0.2
963
Tumor
0.2
447
Tumor
0.2
497
Tumor
0.2
344
Normal
0.2
883
Tumor
0.2
473
Tumor
0.2
127
Tumor
0.1
492
Normal
0.1
915
Tumor
0.1
455
Tumor
0.1
823
Tumor
0.1
537
Tumor
0.1
268
Normal
0.1
983
Tumor
0.1
538
Normal
0.1
873
Tumor
0.1
851
Tumor
0.1
185
Tumor
0.1
213
Tumor
0.1
364
Normal
0.1
954
Normal
0.1
533
Tumor
0.1
498
Normal
0.1
191
Tumor
0.1
391
Tumor
0.1
524
Normal
0.1
567
Tumor
0.1
857
Tumor
0.1
135
Tumor
0.1
755
Tumor
0.1
535
Tumor
0.1
384
Normal
0.1
132
Normal
0.1
387
Tumor
0.1
421
Tumor
0.1
352
Normal
0.0
331
Tumor
0.0
126
Normal
0.0
412
Normal
0.0
385
Tumor
0.0
741
Tumor
0.0
1045
Tumor
0.0
192
Normal
0.0
328
Normal
0.0
138
Normal
0.0
365
Tumor
0.0
488
Normal
0.0
297
Tumor
0.0
953
Tumor
0.0
142
Normal
0.0
672
Normal
0.0
1041
Tumor
0.0
188
Normal
0.0
224
Normal
0.0
124
Normal
0.0
393
Tumor
0.0
916
Normal
0.0
356
Normal
0.0
1044
Normal
0.0
483
Tumor
0.0
262
Normal
0.0
1043
Tumor
0.0
852
Normal
0.0
195
Tumor
0.0
925
Tumor
0.0
958
Normal
0.0
966
Normal
0.0
978
Normal
0.0
145
Tumor
0.0
721
Tumor
0.0
664
Normal
0.0
951
Tumor
0.0
1028
Normal
0.0
285
Tumor
0.0
361
Tumor
-0.1
461
Tumor
-0.1
698
Normal
-0.1
232
Normal
-0.1
662
Normal
-0.1
554
Normal
-0.1
366
Normal
-0.1
187
Tumor
-0.1
716
Normal
-0.1
278
Normal
-0.1
433
Tumor
-0.1
926
Normal
-0.1
546
Normal
-0.1
956
Normal
-0.1
368
Normal
-0.1
212
Normal
-0.1
332
Normal
-0.1
411
Tumor
-0.1
367
Tumor
-0.1
114
Normal
-0.1
518
Normal
-0.1
686
Normal
-0.1
913
Tumor
-0.1
481
Tumor
-0.1
427
Tumor
-0.1
976
Normal
-0.1
528
Normal
-0.1
955
Tumor
-0.1
386
Normal
-0.1
494
Normal
-0.1
467
Tumor
-0.1
975
Tumor
-0.1
1031
Tumor
-0.1
354
Normal
-0.1
395
Tumor
-0.1
727
Tumor
-0.1
312
Normal
-0.1
1042
Normal
-0.1
627
Tumor
-0.1
666
Normal
-0.1
516
Normal
-0.1
534
Normal
-0.1
474
Normal
-0.1
396
Normal
-0.1
446
Normal
-0.1
816
Normal
-0.1
924
Normal
-0.1
472
Normal
-0.1
671
Tumor
-0.1
284
Normal
-0.1
162
Normal
-0.1
984
Normal
-0.1
416
Normal
-0.1
918
Normal
-0.1
923
Tumor
-0.1
714
Normal
-0.1
128
Normal
-0.1
648
Normal
-0.1
272
Normal
-0.1
362
Normal
-0.1
1015
Tumor
-0.1
432
Normal
-0.1
1046
Normal
-0.1
513
Tumor
-0.1
267
Tumor
-0.1
635
Tumor
-0.1
112
Tumor
-0.1
493
Tumor
-0.1
744
Normal
-0.1
968
Normal
-0.1
817
Tumor
-0.2
465
Tumor
-0.2
111
Normal
-0.2
217
Tumor
-0.2
392
Normal
-0.2
636
Normal
-0.2
298
Normal
-0.2
484
Normal
-0.2
778
Normal
-0.2
172
Normal
-0.2
218
Normal
-0.2
558
Normal
-0.2
376
Normal
-0.2
358
Normal
-0.2
314
Normal
-0.2
938
Normal
-0.2
482
Normal
-0.2
922
Normal
-0.2
568
Normal
-0.2
1014
Normal
-0.2
148
Normal
-0.2
573
Tumor
-0.2
884
Normal
-0.2
878
Normal
-0.2
574
Normal
-0.2
642
Normal
-0.2
952
Normal
-0.2
785
Tumor
-0.2
858
Normal
-0.2
363
Tumor
-0.2
423
Tumor
-0.2
1026
Normal
-0.2
743
Tumor
-0.2
881
Tumor
-0.2
696
Normal
-0.2
394
Normal
-0.2
641
Tumor
-0.2
786
Normal
-0.2
228
Normal
-0.2
1022
Normal
-0.2
462
Normal
-0.2
944
Normal
-0.2
258
Normal
-0.2
448
Normal
-0.2
227
Tumor
-0.2
271
Tumor
-0.2
628
Normal
-0.2
713
Tumor
-0.2
572
Normal
-0.2
553
Tumor
-0.2
456
Normal
-0.2
477
Tumor
-0.2
964
Normal
-0.2
695
Tumor
-0.2
214
Normal
-0.2
526
Normal
-0.2
342
Normal
-0.2
982
Normal
-0.2
722
Normal
-0.2
815
Tumor
-0.2
353
Tumor
-0.2
422
Normal
-0.2
186
Normal
-0.2
471
Tumor
-0.3
113
Tumor
-0.3
728
Normal
-0.3
912
Normal
-0.3
341
Tumor
-0.3
882
Normal
-0.3
866
Normal
-0.3
1032
Normal
-0.3
723
Tumor
-0.3
914
Normal
-0.3
545
Tumor
-0.3
824
Normal
-0.3
738
Normal
-0.3
1016
Normal
-0.3
435
Tumor
-0.3
818
Normal
-0.3
514
Normal
-0.3
468
Normal
-0.3
571
Tumor
-0.3
286
Normal
-0.3
564
Normal
-0.3
685
Tumor
-0.3
874
Normal
-0.3
557
Tumor
-0.3
223
Tumor
-0.3
424
Normal
-0.3
464
Normal
-0.3
436
Normal
-0.3
617
Tumor
-0.3
221
Tumor
-0.3
756
Normal
-0.3
745
Tumor
-0.3
967
Tumor
-0.3
388
Normal
-0.3
517
Tumor
-0.4
616
Normal
-0.4
131
Tumor
-0.4
742
Normal
-0.4
864
Normal
-0.4
414
Normal
-0.4
618
Normal
-0.4
862
Normal
-0.4
466
Normal
-0.4
196
Normal
-0.4
868
Normal
-0.4
222
Normal
-0.4
746
Normal
-0.4
452
Normal
-0.4
426
Normal
-0.5
428
Normal
-0.5
1025
Tumor
-0.5
981
Tumor
-0.5
515
Tumor
-0.5
527
Tumor
-0.5
921
Tumor
-0.5
413
Tumor
-0.5
867
Tumor
-0.6
937
Tumor
-0.6
1027
Tumor
-0.6
523
Tumor
-0.6
1021
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
