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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNIP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
93.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1037.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
708.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
680.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
645.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
504.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
427.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
401.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
384.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
381.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
381.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
376.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
350.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
332.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
310.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
309.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
303.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
294.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
284.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
279.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
264.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
262.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
258.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
253.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
244.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
240.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
226.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
222.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
221.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
217.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
212.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
206.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
203.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
202.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
201.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
197.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
196.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
194.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
190.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
189.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
188.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
186.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
186.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
185.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
180.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
179.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
177.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
172.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
168.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
167.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
167.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
165.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
165.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
162.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
162.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
161.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
161.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
161.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
158.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
156.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
156.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
156.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
153.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
152.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
151.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
151.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
148.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
148.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
148.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
146.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
143.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
143.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
138.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
132.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
129.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
128.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
126.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
124.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
123.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
122.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
122.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
121.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
120.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
120.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
120.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
119.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
119.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
119.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
117.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
117.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
116.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
115.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
114.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
113.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
110.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
109.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
107.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
107.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
106.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
105.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
104.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
104.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
103.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
102.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
102.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
101.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
101.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
101.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
101.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
100.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
98.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
97.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
97.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
97.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
96.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
96.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
96.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
96.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
95.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
94.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
93.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
92.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
92.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
92.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
91.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
89.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
89.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
89.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
88.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
87.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
87.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
87.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
87.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
86.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
86.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
86.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
86.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
85.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
83.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
83.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
82.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
82.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
82.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
82.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
81.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
78.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
78.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
78.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
78.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
77.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
76.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
76.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
76.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
75.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
75.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
73.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
73.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
72.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
71.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
70.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
67.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
65.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
65.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
64.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
64.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
64.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
63.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
63.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
63.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
62.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
61.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
61.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
60.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
60.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
60.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
59.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
59.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
58.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
57.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
57.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
56.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
56.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
55.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
55.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
54.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
54.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
53.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
52.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
52.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
51.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
51.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
50.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
50.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
49.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
48.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
48.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
47.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
46.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
46.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
45.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
45.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
45.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
43.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
42.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
39.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
39.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
37.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
37.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
36.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
36.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
36.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
33.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNIP is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
137.3
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
1557.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
776.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
748.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
707.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
585.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
537.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
437.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
408.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
406.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
387.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
368.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
367.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
346.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
343.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
340.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
330.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
330.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
312.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
310.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
293.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
284.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
283.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
269.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
259.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
251.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
251.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
249.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
240.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
239.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
234.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
233.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
233.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
225.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
225.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
223.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
222.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
220.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
220.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
217.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
212.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
210.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
209.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
205.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
203.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
198.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
197.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
197.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
193.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
192.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
192.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
191.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
190.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
188.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
187.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
183.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
182.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
176.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
175.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
175.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
175.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
175.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
173.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
172.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
170.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
167.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
166.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
165.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
161.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
160.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
158.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
157.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
155.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
155.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
154.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
150.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
150.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
149.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
144.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
142.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
142.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
140.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
139.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
134.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
134.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
133.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
133.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
132.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
132.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
132.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
129.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
128.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
128.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
128.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
127.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
124.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
123.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
123.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
122.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
122.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
122.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
122.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
120.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
119.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
116.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
116.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
114.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
114.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
114.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
113.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
113.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
112.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
112.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
111.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
104.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
103.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
100.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
100.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
99.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
98.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
98.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
97.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
97.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
94.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
93.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
92.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
92.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
91.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
90.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
86.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
81.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
78.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
77.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
76.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
76.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
75.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
74.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
74.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
74.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
73.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
72.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
72.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
72.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
71.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
70.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
70.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
69.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
68.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
65.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
63.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
62.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
61.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
61.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
58.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
56.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
56.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
55.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
54.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
54.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
53.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
52.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
52.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
51.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
50.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
48.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
42.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
35.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.5
877
Tumor
1.4
497
Tumor
1.1
383
Tumor
1.0
188
Normal
1.0
863
Tumor
1.0
342
Normal
0.9
424
Normal
0.9
311
Tumor
0.9
131
Tumor
0.9
186
Normal
0.9
984
Normal
0.9
617
Tumor
0.9
618
Normal
0.9
352
Normal
0.8
816
Normal
0.8
777
Tumor
0.8
744
Normal
0.8
444
Normal
0.7
817
Tumor
0.7
672
Normal
0.7
461
Tumor
0.7
982
Normal
0.7
824
Normal
0.7
884
Normal
0.7
384
Normal
0.7
664
Normal
0.6
455
Tumor
0.6
388
Normal
0.6
172
Normal
0.6
393
Tumor
0.6
422
Normal
0.6
142
Normal
0.6
574
Normal
0.6
421
Tumor
0.6
434
Normal
0.6
968
Normal
0.6
128
Normal
0.6
126
Normal
0.6
878
Normal
0.6
354
Normal
0.6
573
Tumor
0.6
468
Normal
0.6
714
Normal
0.6
482
Normal
0.6
141
Tumor
0.5
823
Tumor
0.5
332
Normal
0.5
978
Normal
0.5
394
Normal
0.5
192
Normal
0.5
375
Tumor
0.5
956
Normal
0.5
148
Normal
0.5
214
Normal
0.5
1042
Normal
0.5
298
Normal
0.5
917
Tumor
0.5
428
Normal
0.5
1014
Normal
0.5
815
Tumor
0.5
297
Tumor
0.5
125
Tumor
0.4
914
Normal
0.4
728
Normal
0.4
464
Normal
0.4
738
Normal
0.4
491
Tumor
0.4
467
Tumor
0.4
187
Tumor
0.4
976
Normal
0.4
396
Normal
0.4
913
Tumor
0.4
344
Normal
0.4
818
Normal
0.4
272
Normal
0.4
368
Normal
0.4
952
Normal
0.3
492
Normal
0.3
138
Normal
0.3
426
Normal
0.3
162
Normal
0.3
567
Tumor
0.3
432
Normal
0.3
268
Normal
0.3
356
Normal
0.3
386
Normal
0.3
146
Normal
0.3
494
Normal
0.3
648
Normal
0.3
813
Tumor
0.3
358
Normal
0.3
423
Tumor
0.3
721
Tumor
0.3
814
Normal
0.3
716
Normal
0.3
132
Normal
0.3
362
Normal
0.3
185
Tumor
0.3
852
Normal
0.3
446
Normal
0.3
213
Tumor
0.2
431
Tumor
0.2
312
Normal
0.2
392
Normal
0.2
742
Normal
0.2
568
Normal
0.2
864
Normal
0.2
365
Tumor
0.2
1044
Normal
0.2
471
Tumor
0.2
564
Normal
0.2
671
Tumor
0.2
536
Normal
0.2
136
Normal
0.2
916
Normal
0.2
353
Tumor
0.2
447
Tumor
0.2
628
Normal
0.2
271
Tumor
0.2
222
Normal
0.2
224
Normal
0.2
433
Tumor
0.2
1031
Tumor
0.2
366
Normal
0.2
456
Normal
0.2
515
Tumor
0.2
661
Tumor
0.2
196
Normal
0.2
666
Normal
0.2
391
Tumor
0.2
376
Normal
0.2
662
Normal
0.2
975
Tumor
0.2
627
Tumor
0.1
938
Normal
0.1
642
Normal
0.1
218
Normal
0.1
1032
Normal
0.1
341
Tumor
0.1
912
Normal
0.1
1022
Normal
0.1
135
Tumor
0.1
414
Normal
0.1
874
Normal
0.1
883
Tumor
0.1
343
Tumor
0.1
262
Normal
0.1
217
Tumor
0.1
858
Normal
0.1
524
Normal
0.1
481
Tumor
0.1
713
Tumor
0.1
553
Tumor
0.0
466
Normal
0.0
284
Normal
0.0
882
Normal
0.0
474
Normal
0.0
411
Tumor
0.0
286
Normal
0.0
357
Tumor
0.0
1026
Normal
0.0
636
Normal
0.0
516
Normal
0.0
1028
Normal
0.0
228
Normal
0.0
258
Normal
0.0
147
Tumor
0.0
1043
Tumor
0.0
862
Normal
0.0
448
Normal
-0.1
641
Tumor
-0.1
746
Normal
-0.1
722
Normal
-0.1
958
Normal
-0.1
563
Tumor
-0.1
953
Tumor
-0.1
921
Tumor
-0.1
866
Normal
-0.1
955
Tumor
-0.1
387
Tumor
-0.1
554
Normal
-0.1
954
Normal
-0.1
756
Normal
-0.1
361
Tumor
-0.1
943
Tumor
-0.1
786
Normal
-0.2
452
Normal
-0.2
635
Tumor
-0.2
211
Tumor
-0.2
528
Normal
-0.2
195
Tumor
-0.2
981
Tumor
-0.2
261
Tumor
-0.2
191
Tumor
-0.2
737
Tumor
-0.2
395
Tumor
-0.2
436
Normal
-0.2
232
Normal
-0.2
616
Normal
-0.2
445
Tumor
-0.2
857
Tumor
-0.2
696
Normal
-0.2
145
Tumor
-0.2
416
Normal
-0.2
727
Tumor
-0.2
278
Normal
-0.2
137
Tumor
-0.2
364
Normal
-0.2
223
Tumor
-0.2
462
Normal
-0.2
911
Tumor
-0.3
1016
Normal
-0.3
527
Tumor
-0.3
983
Tumor
-0.3
1046
Normal
-0.3
851
Tumor
-0.3
351
Tumor
-0.3
314
Normal
-0.3
663
Tumor
-0.3
427
Tumor
-0.3
161
Tumor
-0.3
534
Normal
-0.3
111
Normal
-0.3
951
Tumor
-0.3
873
Tumor
-0.3
283
Tumor
-0.3
615
Tumor
-0.3
977
Tumor
-0.3
665
Tumor
-0.3
572
Normal
-0.3
443
Tumor
-0.3
647
Tumor
-0.3
514
Normal
-0.3
1041
Tumor
-0.3
868
Normal
-0.3
785
Tumor
-0.3
745
Tumor
-0.3
227
Tumor
-0.4
498
Normal
-0.4
545
Tumor
-0.4
257
Tumor
-0.4
881
Tumor
-0.4
526
Normal
-0.4
558
Normal
-0.4
944
Normal
-0.4
221
Tumor
-0.4
571
Tumor
-0.4
212
Normal
-0.4
1025
Tumor
-0.4
922
Normal
-0.4
523
Tumor
-0.4
463
Tumor
-0.4
517
Tumor
-0.4
546
Normal
-0.4
697
Tumor
-0.4
484
Normal
-0.4
465
Tumor
-0.4
114
Normal
-0.4
715
Tumor
-0.4
698
Normal
-0.5
478
Normal
-0.5
755
Tumor
-0.5
385
Tumor
-0.5
487
Tumor
-0.5
355
Tumor
-0.5
483
Tumor
-0.5
513
Tumor
-0.5
472
Normal
-0.5
412
Normal
-0.5
861
Tumor
-0.5
124
Normal
-0.5
918
Normal
-0.5
686
Normal
-0.5
277
Tumor
-0.5
367
Tumor
-0.5
413
Tumor
-0.5
1021
Tumor
-0.6
1015
Tumor
-0.6
1045
Tumor
-0.6
778
Normal
-0.6
231
Tumor
-0.6
363
Tumor
-0.6
923
Tumor
-0.6
451
Tumor
-0.6
518
Normal
-0.6
127
Tumor
-0.6
535
Tumor
-0.6
915
Tumor
-0.6
267
Tumor
-0.6
415
Tumor
-0.6
171
Tumor
-0.6
327
Tumor
-0.6
937
Tumor
-0.6
493
Tumor
-0.6
488
Normal
-0.6
538
Normal
-0.6
533
Tumor
-0.6
925
Tumor
-0.6
867
Tumor
-0.7
741
Tumor
-0.7
328
Normal
-0.7
331
Tumor
-0.7
525
Tumor
-0.7
966
Normal
-0.7
743
Tumor
-0.7
435
Tumor
-0.8
865
Tumor
-0.8
723
Tumor
-0.8
285
Tumor
-0.8
926
Normal
-0.8
957
Tumor
-0.8
1027
Tumor
-0.8
724
Normal
-0.8
557
Tumor
-0.9
313
Tumor
-0.9
924
Normal
-0.9
967
Tumor
-0.9
113
Tumor
-0.9
963
Tumor
-1.0
695
Tumor
-1.1
685
Tumor
-1.1
537
Tumor
-1.2
964
Normal
-1.2
112
Tumor
-1.2
477
Tumor
-1.3
123
Tumor
-1.7
1013
Tumor
-1.8
473
Tumor
-1.8
965
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.