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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF2I is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
117.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
117.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
109.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
84.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
77.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
76.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
74.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
72.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
65.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
64.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
63.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
62.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
62.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
60.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
59.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
59.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
57.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
56.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
54.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
54.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
53.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
53.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
52.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
51.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
49.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
46.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
46.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
44.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
43.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
43.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
42.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
42.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
42.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
41.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
38.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
32.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF2I is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
45.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.3
131
Tumor
1.2
425
Tumor
1.2
351
Tumor
1.1
957
Tumor
1.0
967
Tumor
1.0
737
Tumor
1.0
385
Tumor
1.0
445
Tumor
0.9
815
Tumor
0.9
671
Tumor
0.8
965
Tumor
0.8
483
Tumor
0.8
951
Tumor
0.8
463
Tumor
0.8
695
Tumor
0.8
455
Tumor
0.7
331
Tumor
0.7
285
Tumor
0.7
313
Tumor
0.7
535
Tumor
0.7
727
Tumor
0.7
497
Tumor
0.7
1013
Tumor
0.7
715
Tumor
0.6
665
Tumor
0.6
661
Tumor
0.6
915
Tumor
0.6
431
Tumor
0.6
211
Tumor
0.6
865
Tumor
0.6
545
Tumor
0.6
481
Tumor
0.6
977
Tumor
0.5
785
Tumor
0.5
375
Tumor
0.5
413
Tumor
0.5
537
Tumor
0.5
411
Tumor
0.5
685
Tumor
0.5
635
Tumor
0.5
277
Tumor
0.5
983
Tumor
0.5
297
Tumor
0.5
271
Tumor
0.5
817
Tumor
0.5
911
Tumor
0.4
943
Tumor
0.4
261
Tumor
0.4
851
Tumor
0.4
877
Tumor
0.4
523
Tumor
0.4
921
Tumor
0.4
813
Tumor
0.4
363
Tumor
0.4
615
Tumor
0.4
881
Tumor
0.4
641
Tumor
0.4
1041
Tumor
0.4
137
Tumor
0.4
515
Tumor
0.4
975
Tumor
0.3
1027
Tumor
0.3
517
Tumor
0.3
465
Tumor
0.3
867
Tumor
0.3
1021
Tumor
0.3
471
Tumor
0.3
443
Tumor
0.3
135
Tumor
0.3
883
Tumor
0.3
355
Tumor
0.3
147
Tumor
0.3
814
Normal
0.2
1043
Tumor
0.2
161
Tumor
0.2
1031
Tumor
0.2
777
Tumor
0.2
917
Tumor
0.2
493
Tumor
0.2
1045
Tumor
0.2
213
Tumor
0.2
221
Tumor
0.2
171
Tumor
0.2
357
Tumor
0.2
741
Tumor
0.2
451
Tumor
0.2
367
Tumor
0.2
283
Tumor
0.2
447
Tumor
0.2
365
Tumor
0.2
527
Tumor
0.1
557
Tumor
0.1
231
Tumor
0.1
553
Tumor
0.1
423
Tumor
0.1
127
Tumor
0.1
923
Tumor
0.1
873
Tumor
0.1
647
Tumor
0.1
663
Tumor
0.1
187
Tumor
0.1
953
Tumor
0.1
937
Tumor
0.1
227
Tumor
0.1
427
Tumor
0.1
963
Tumor
0.1
217
Tumor
0.1
755
Tumor
0.0
491
Tumor
0.0
341
Tumor
0.0
125
Tumor
0.0
1025
Tumor
0.0
925
Tumor
0.0
563
Tumor
0.0
823
Tumor
0.0
393
Tumor
0.0
461
Tumor
0.0
387
Tumor
0.0
857
Tumor
0.0
435
Tumor
0.0
343
Tumor
0.0
467
Tumor
0.0
361
Tumor
-0.1
191
Tumor
-0.1
861
Tumor
-0.1
314
Normal
-0.1
113
Tumor
-0.1
955
Tumor
-0.1
353
Tumor
-0.1
484
Normal
-0.1
123
Tumor
-0.1
298
Normal
-0.1
513
Tumor
-0.1
534
Normal
-0.1
257
Tumor
-0.1
1014
Normal
-0.1
744
Normal
-0.1
724
Normal
-0.1
756
Normal
-0.1
742
Normal
-0.1
195
Tumor
-0.1
573
Tumor
-0.1
223
Tumor
-0.1
421
Tumor
-0.1
412
Normal
-0.1
498
Normal
-0.1
1032
Normal
-0.1
713
Tumor
-0.1
786
Normal
-0.1
185
Tumor
-0.1
546
Normal
-0.1
332
Normal
-0.1
473
Tumor
-0.2
664
Normal
-0.2
882
Normal
-0.2
745
Tumor
-0.2
571
Tumor
-0.2
938
Normal
-0.2
433
Tumor
-0.2
964
Normal
-0.2
186
Normal
-0.2
477
Tumor
-0.2
858
Normal
-0.2
1015
Tumor
-0.2
1046
Normal
-0.2
984
Normal
-0.2
267
Tumor
-0.2
148
Normal
-0.2
162
Normal
-0.2
648
Normal
-0.2
446
Normal
-0.2
444
Normal
-0.2
516
Normal
-0.2
666
Normal
-0.2
426
Normal
-0.2
924
Normal
-0.2
436
Normal
-0.2
818
Normal
-0.2
132
Normal
-0.2
311
Tumor
-0.2
192
Normal
-0.2
866
Normal
-0.2
146
Normal
-0.2
738
Normal
-0.2
616
Normal
-0.2
697
Tumor
-0.2
448
Normal
-0.2
364
Normal
-0.2
922
Normal
-0.2
492
Normal
-0.2
472
Normal
-0.2
514
Normal
-0.2
386
Normal
-0.2
478
Normal
-0.2
714
Normal
-0.2
328
Normal
-0.2
746
Normal
-0.2
278
Normal
-0.2
954
Normal
-0.2
464
Normal
-0.2
716
Normal
-0.2
824
Normal
-0.2
958
Normal
-0.2
212
Normal
-0.2
536
Normal
-0.2
232
Normal
-0.2
388
Normal
-0.2
188
Normal
-0.2
488
Normal
-0.2
723
Tumor
-0.2
482
Normal
-0.2
1016
Normal
-0.2
286
Normal
-0.2
268
Normal
-0.2
878
Normal
-0.2
568
Normal
-0.2
912
Normal
-0.3
228
Normal
-0.3
698
Normal
-0.3
662
Normal
-0.3
384
Normal
-0.3
342
Normal
-0.3
884
Normal
-0.3
272
Normal
-0.3
196
Normal
-0.3
312
Normal
-0.3
966
Normal
-0.3
352
Normal
-0.3
392
Normal
-0.3
696
Normal
-0.3
618
Normal
-0.3
284
Normal
-0.3
926
Normal
-0.3
976
Normal
-0.3
456
Normal
-0.3
376
Normal
-0.3
862
Normal
-0.3
538
Normal
-0.3
362
Normal
-0.3
628
Normal
-0.3
564
Normal
-0.3
918
Normal
-0.3
874
Normal
-0.3
728
Normal
-0.3
525
Tumor
-0.3
452
Normal
-0.3
1042
Normal
-0.3
141
Tumor
-0.3
422
Normal
-0.3
982
Normal
-0.3
462
Normal
-0.3
142
Normal
-0.3
172
Normal
-0.3
224
Normal
-0.3
574
Normal
-0.3
778
Normal
-0.3
916
Normal
-0.3
416
Normal
-0.3
524
Normal
-0.3
356
Normal
-0.3
1026
Normal
-0.3
434
Normal
-0.3
952
Normal
-0.3
528
Normal
-0.3
627
Tumor
-0.3
354
Normal
-0.3
466
Normal
-0.3
432
Normal
-0.3
968
Normal
-0.3
554
Normal
-0.3
518
Normal
-0.3
978
Normal
-0.3
686
Normal
-0.3
944
Normal
-0.3
424
Normal
-0.3
981
Tumor
-0.3
394
Normal
-0.3
672
Normal
-0.3
864
Normal
-0.3
494
Normal
-0.3
258
Normal
-0.3
487
Tumor
-0.3
956
Normal
-0.3
415
Tumor
-0.3
138
Normal
-0.3
572
Normal
-0.3
222
Normal
-0.3
852
Normal
-0.3
1022
Normal
-0.3
636
Normal
-0.3
262
Normal
-0.3
114
Normal
-0.3
414
Normal
-0.3
533
Tumor
-0.3
428
Normal
-0.3
816
Normal
-0.3
913
Tumor
-0.3
722
Normal
-0.3
128
Normal
-0.3
126
Normal
-0.3
526
Normal
-0.4
358
Normal
-0.4
124
Normal
-0.4
344
Normal
-0.4
1044
Normal
-0.4
396
Normal
-0.4
218
Normal
-0.4
914
Normal
-0.4
145
Tumor
-0.4
1028
Normal
-0.4
395
Tumor
-0.4
868
Normal
-0.4
721
Tumor
-0.4
214
Normal
-0.4
366
Normal
-0.4
111
Normal
-0.4
136
Normal
-0.4
383
Tumor
-0.4
474
Normal
-0.4
642
Normal
-0.4
468
Normal
-0.4
567
Tumor
-0.4
391
Tumor
-0.4
327
Tumor
-0.5
617
Tumor
-0.5
558
Normal
-0.5
112
Tumor
-0.5
368
Normal
-0.5
863
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
