MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.3 nTPM
HPA Brain:120.7 nTPM
GTEx:29.3 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:114.3 nTPM
Mouse:72.5 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 120.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.0
2019 Male, age 18, unknown 124.3
1833 Male, age 53, unknown 119.9
1830 Male, age 51, unknown 119.7
1870 Female, age 42, unknown 116.0
2411 Female, age 72, unknown 113.9
1827 Male, age 72, unknown 113.1
2828 Female, age 72, unknown 110.6
2219 Male, age 76, both hemispheres 106.9
2586 Male, age 75, left hemisphere 103.7
2666 Male, age 74, left hemisphere 102.4
Dorsal raphe nucleus
nTPM: 111.5
2750 Male, age 76, both hemispheres 116.5
2016 Female, age 72, unknown 113.3
1828 Male, age 53, unknown 113.0
2298 Female, age 72, unknown 108.4
2047 Male, age 72, unknown 106.1
Inferior colliculus
nTPM: 116.8
2097 Female, age 72, unknown 120.5
1890 Male, age 53, unknown 117.6
1848 Female, age 42, unknown 116.9
2849 Male, age 72, unknown 112.3
Median raphe nucleus
nTPM: 110.5
2220 Male, age 76, midline 110.5
Periaquaductal grey, anterior
nTPM: 107.2
1947 Male, age 18, unknown 110.1
2502 Female, age 75, unknown 109.5
1795 Male, age 51, unknown 101.9
Periaquaductal grey, dorsal
nTPM: 114.0
2850 Male, age 76, both hemispheres 121.9
1831 Male, age 72, unknown 112.7
2464 Female, age 72, unknown 112.2
1840 Male, age 53, unknown 109.0
Periaquaductal grey, lateral
nTPM: 112.0
2272 Male, age 74, both hemispheres 118.4
2140 Male, age 76, both hemispheres 113.4
2053 Male, age 18, unknown 104.2
Pretectal area
nTPM: 115.4
1817 Female, age 42, unknown 121.1
1815 Male, age 53, unknown 120.2
2273 Male, age 74, both hemispheres 119.8
2007 Male, age 72, unknown 117.6
2667 Female, age 75, unknown 117.0
1944 Female, age 72, unknown 116.6
1816 Male, age 51, unknown 116.4
2224 Female, age 72, unknown 112.4
2316 Male, age 76, right hemisphere 112.2
2407 Male, age 75, both hemispheres 108.6
2825 Male, age 18, unknown 107.7
Red nucleus
nTPM: 120.7
2823 Male, age 76, right hemisphere 129.8
1821 Female, age 72, unknown 129.5
1954 Female, age 42, unknown 127.3
1904 Male, age 53, unknown 126.3
1865 Male, age 51, unknown 125.7
2503 Female, age 72, unknown 123.3
2785 Male, age 18, unknown 121.6
2769 Male, age 72, unknown 118.7
2227 Male, age 72, unknown 116.8
2588 Male, age 74, left hemisphere 115.4
2725 Female, age 75, unknown 109.2
2584 Male, age 75, left hemisphere 104.3
Substantia nigra
nTPM: 112.8
2241 Male, age 72, unknown 121.8
2590 Female, age 75, unknown 120.6
2583 Male, age 75, right hemisphere 117.6
1889 Female, age 72, unknown 115.6
1851 Male, age 51, unknown 113.6
2699 Male, age 18, unknown 113.4
2409 Female, age 72, unknown 108.6
1916 Female, age 42, unknown 106.4
2665 Male, age 74, both hemispheres 106.1
1941 Male, age 53, unknown 104.3
Superior colliculus
nTPM: 112.7
2087 Female, age 72, unknown 119.0
1995 Male, age 72, unknown 117.6
1895 Male, age 76, right hemisphere 116.7
1913 Female, age 42, unknown 116.6
2587 Male, age 74, left hemisphere 113.9
2261 Male, age 18, unknown 112.3
2668 Female, age 75, unknown 111.9
1839 Male, age 51, unknown 108.1
1796 Male, age 53, unknown 107.1
2664 Male, age 75, both hemispheres 103.7
Ventral tegmental area
nTPM: 108.8
2223 Female, age 72, unknown 114.0
2410 Female, age 72, unknown 112.2
2218 Male, age 76, both hemispheres 110.8
2021 Male, age 53, unknown 108.7
1942 Male, age 51, unknown 105.6
1915 Female, age 42, unknown 101.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.3
Samples: 139

Max nTPM: 56.7
Min nTPM: 5.9
Std nTPM: 8.7
Median nTPM: 28.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 51.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 50.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 49.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 49.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 48.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 47.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 44.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 44.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.4
FF:10158-103A5 76 years, female 131.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 114.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.9
Samples: 4

Max nTPM: 111.4
Min nTPM: 93.9
Sample A Female 106.3
Sample B Female 93.9
Sample C Male 95.9
Sample D Male 111.4
Midbrain
nTPM: 114.4
Samples: 4

Max nTPM: 137.5
Min nTPM: 97.7
Sample A Female 137.5
Sample B Female 101.7
Sample C Male 120.5
Sample D Male 97.7
Periaqueductal gray
nTPM: 92.4
Samples: 3

Max nTPM: 98.1
Min nTPM: 87.9
Sample B Female 98.1
Sample C Male 91.3
Sample D Male 87.9
Superior colliculi
nTPM: 108.1
Samples: 4

Max nTPM: 113.8
Min nTPM: 103.6
Sample A Female 109.3
Sample B Female 105.7
Sample C Male 113.8
Sample D Male 103.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 72.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.4
Samples: 4

Max nTPM: 76.0
Min nTPM: 71.0
Sample A Male 71.3
Sample B Male 71.0
Sample C Female 76.0
Sample D Female 71.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
2277 Antisense, RP_Baylor_102834, Mouse strain C57BL/6J (56 days, male) 4.0
2278 Antisense, RP_Baylor_102834, Mouse strain C57BL/6J (56 days, male) 3.7

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