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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNPY2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
127.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
126.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
124.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
113.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
102.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
96.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
95.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
95.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
89.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
88.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
88.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
87.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
85.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
84.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
81.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
81.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
80.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
79.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
78.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
78.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
78.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
77.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
76.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
76.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
73.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
73.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
73.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
72.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
71.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
71.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
71.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
71.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
71.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
71.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
70.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
70.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
68.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
68.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
67.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
66.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
66.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
65.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
65.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
64.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
63.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
63.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
63.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
63.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
63.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
62.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
62.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
61.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
60.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
60.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
60.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
59.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
59.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
59.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
59.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
59.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
59.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
59.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
59.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
58.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
58.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
58.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
58.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
57.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
57.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
57.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
57.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
57.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
57.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
56.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
56.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
56.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
55.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
55.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
55.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
55.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
55.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
54.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
54.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
53.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
53.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
53.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
52.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
52.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
52.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
52.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
51.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
51.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
51.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
50.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
50.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
50.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
49.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
49.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
49.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
49.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
49.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
48.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
47.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
47.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
47.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
47.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
46.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
46.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
45.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
45.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
44.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
44.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
44.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
44.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
44.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
43.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
43.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
43.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
43.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
43.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
43.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
42.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
42.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
42.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
42.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
42.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
41.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
41.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
41.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
40.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
40.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
40.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
40.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
39.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
39.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
38.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
37.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
37.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
37.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
34.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
25.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
25.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNPY2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
73.2
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
184.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
169.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
167.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
155.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
154.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
152.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
140.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
135.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
131.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
130.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
130.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
129.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
128.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
122.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
121.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
120.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
116.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
114.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
114.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
114.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
113.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
113.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
110.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
108.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
106.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
106.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
104.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
103.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
103.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
102.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
102.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
101.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
100.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
99.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
99.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
98.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
98.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
98.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
96.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
96.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
95.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
95.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
95.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
94.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
94.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
94.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
93.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
93.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
93.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
92.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
92.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
92.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
92.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
92.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
91.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
91.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
90.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
89.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
89.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
89.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
88.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
87.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
87.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
87.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
85.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
85.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
85.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
84.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
84.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
84.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
83.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
83.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
82.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
82.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
81.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
81.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
80.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
80.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
80.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
79.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
79.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
79.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
79.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
78.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
77.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
77.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
76.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
76.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
75.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
75.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
74.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
74.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
74.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
73.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
73.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
73.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
73.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
72.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
72.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
72.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
72.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
72.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
71.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
70.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
70.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
70.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
70.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
70.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
69.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
69.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
69.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
69.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
67.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
67.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
67.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
67.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
67.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
66.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
66.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
66.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
66.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
65.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
65.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
64.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
64.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
63.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
63.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
63.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
63.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
63.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
62.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
62.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
61.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
61.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
61.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
60.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
60.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
60.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
60.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
60.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
60.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
59.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
59.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
58.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
58.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
58.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
58.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
58.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
58.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
57.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
57.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
57.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
56.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
55.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
55.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
54.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
54.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
54.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
53.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
53.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
53.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
52.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
51.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
50.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
48.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
46.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
44.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
43.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
42.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
42.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
37.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
1.1
131
Tumor
1.1
745
Tumor
1.0
1013
Tumor
1.0
1027
Tumor
0.9
737
Tumor
0.8
123
Tumor
0.8
713
Tumor
0.8
915
Tumor
0.8
695
Tumor
0.8
147
Tumor
0.7
615
Tumor
0.7
435
Tumor
0.7
1025
Tumor
0.7
1043
Tumor
0.7
857
Tumor
0.7
911
Tumor
0.7
1021
Tumor
0.7
545
Tumor
0.6
477
Tumor
0.6
554
Normal
0.6
481
Tumor
0.6
743
Tumor
0.5
937
Tumor
0.5
351
Tumor
0.5
697
Tumor
0.5
813
Tumor
0.5
517
Tumor
0.5
851
Tumor
0.5
696
Normal
0.5
261
Tumor
0.5
977
Tumor
0.5
715
Tumor
0.4
965
Tumor
0.4
527
Tumor
0.4
331
Tumor
0.4
524
Normal
0.4
863
Tumor
0.4
426
Normal
0.4
955
Tumor
0.4
553
Tumor
0.4
277
Tumor
0.4
523
Tumor
0.4
777
Tumor
0.4
877
Tumor
0.4
452
Normal
0.4
1015
Tumor
0.4
217
Tumor
0.4
636
Normal
0.4
714
Normal
0.3
363
Tumor
0.3
981
Tumor
0.3
433
Tumor
0.3
967
Tumor
0.3
1014
Normal
0.3
647
Tumor
0.3
127
Tumor
0.3
698
Normal
0.3
342
Normal
0.3
412
Normal
0.3
411
Tumor
0.3
124
Normal
0.3
744
Normal
0.3
957
Tumor
0.3
195
Tumor
0.3
1044
Normal
0.3
473
Tumor
0.3
465
Tumor
0.3
186
Normal
0.3
722
Normal
0.3
393
Tumor
0.3
926
Normal
0.3
572
Normal
0.3
984
Normal
0.3
862
Normal
0.3
951
Tumor
0.3
231
Tumor
0.3
723
Tumor
0.3
867
Tumor
0.3
546
Normal
0.3
354
Normal
0.3
537
Tumor
0.3
741
Tumor
0.2
137
Tumor
0.2
526
Normal
0.2
938
Normal
0.2
921
Tumor
0.2
142
Normal
0.2
221
Tumor
0.2
445
Tumor
0.2
497
Tumor
0.2
357
Tumor
0.2
518
Normal
0.2
218
Normal
0.2
716
Normal
0.2
285
Tumor
0.2
672
Normal
0.2
112
Tumor
0.2
557
Tumor
0.2
746
Normal
0.2
356
Normal
0.2
925
Tumor
0.2
878
Normal
0.2
778
Normal
0.2
341
Tumor
0.2
1028
Normal
0.2
952
Normal
0.2
431
Tumor
0.2
873
Tumor
0.2
267
Tumor
0.2
1022
Normal
0.2
227
Tumor
0.2
493
Tumor
0.2
314
Normal
0.2
196
Normal
0.2
364
Normal
0.2
721
Tumor
0.1
385
Tumor
0.1
332
Normal
0.1
982
Normal
0.1
494
Normal
0.1
738
Normal
0.1
978
Normal
0.1
514
Normal
0.1
852
Normal
0.1
568
Normal
0.1
956
Normal
0.1
132
Normal
0.1
484
Normal
0.1
538
Normal
0.1
148
Normal
0.1
534
Normal
0.1
944
Normal
0.1
785
Tumor
0.1
384
Normal
0.1
367
Tumor
0.1
963
Tumor
0.1
376
Normal
0.1
1026
Normal
0.1
648
Normal
0.1
128
Normal
0.1
415
Tumor
0.1
222
Normal
0.1
616
Normal
0.1
968
Normal
0.1
954
Normal
0.1
463
Tumor
0.1
918
Normal
0.1
422
Normal
0.1
358
Normal
0.1
468
Normal
0.1
368
Normal
0.1
861
Tumor
0.1
866
Normal
0.1
466
Normal
0.1
414
Normal
0.1
1041
Tumor
0.1
882
Normal
0.1
571
Tumor
0.1
864
Normal
0.1
232
Normal
0.1
471
Tumor
0.1
535
Tumor
0.1
666
Normal
0.1
284
Normal
0.1
662
Normal
0.1
1016
Normal
0.0
742
Normal
0.0
278
Normal
0.0
818
Normal
0.0
564
Normal
0.0
567
Tumor
0.0
664
Normal
0.0
966
Normal
0.0
114
Normal
0.0
912
Normal
0.0
814
Normal
0.0
671
Tumor
0.0
573
Tumor
0.0
464
Normal
0.0
482
Normal
0.0
525
Tumor
0.0
125
Tumor
0.0
462
Normal
0.0
214
Normal
0.0
478
Normal
0.0
868
Normal
0.0
755
Tumor
0.0
448
Normal
0.0
914
Normal
0.0
171
Tumor
0.0
1046
Normal
0.0
387
Tumor
0.0
228
Normal
0.0
922
Normal
0.0
816
Normal
0.0
392
Normal
0.0
558
Normal
0.0
113
Tumor
0.0
286
Normal
0.0
146
Normal
0.0
976
Normal
0.0
416
Normal
0.0
223
Tumor
0.0
257
Tumor
0.0
884
Normal
0.0
516
Normal
0.0
874
Normal
0.0
313
Tumor
0.0
388
Normal
0.0
365
Tumor
0.0
138
Normal
0.0
436
Normal
0.0
224
Normal
0.0
432
Normal
-0.1
513
Tumor
-0.1
498
Normal
-0.1
145
Tumor
-0.1
472
Normal
-0.1
686
Normal
-0.1
943
Tumor
-0.1
786
Normal
-0.1
283
Tumor
-0.1
344
Normal
-0.1
456
Normal
-0.1
964
Normal
-0.1
352
Normal
-0.1
536
Normal
-0.1
975
Tumor
-0.1
924
Normal
-0.1
136
Normal
-0.1
191
Tumor
-0.1
728
Normal
-0.1
212
Normal
-0.1
483
Tumor
-0.1
574
Normal
-0.1
958
Normal
-0.1
953
Tumor
-0.1
528
Normal
-0.1
451
Tumor
-0.1
923
Tumor
-0.1
162
Normal
-0.1
488
Normal
-0.1
685
Tumor
-0.1
262
Normal
-0.1
111
Normal
-0.1
395
Tumor
-0.1
135
Tumor
-0.1
434
Normal
-0.1
423
Tumor
-0.1
361
Tumor
-0.1
533
Tumor
-0.1
917
Tumor
-0.1
343
Tumor
-0.1
492
Normal
-0.1
756
Normal
-0.1
916
Normal
-0.1
865
Tumor
-0.1
327
Tumor
-0.1
883
Tumor
-0.1
1042
Normal
-0.1
665
Tumor
-0.2
366
Normal
-0.2
467
Tumor
-0.2
815
Tumor
-0.2
858
Normal
-0.2
817
Tumor
-0.2
298
Normal
-0.2
443
Tumor
-0.2
724
Normal
-0.2
635
Tumor
-0.2
474
Normal
-0.2
126
Normal
-0.2
268
Normal
-0.2
312
Normal
-0.2
1031
Tumor
-0.2
641
Tumor
-0.2
824
Normal
-0.2
461
Tumor
-0.2
823
Tumor
-0.2
355
Tumor
-0.2
161
Tumor
-0.2
424
Normal
-0.2
618
Normal
-0.2
455
Tumor
-0.2
362
Normal
-0.2
258
Normal
-0.2
515
Tumor
-0.2
913
Tumor
-0.2
444
Normal
-0.2
328
Normal
-0.2
983
Tumor
-0.2
1032
Normal
-0.2
271
Tumor
-0.2
172
Normal
-0.2
386
Normal
-0.3
425
Tumor
-0.3
394
Normal
-0.3
881
Tumor
-0.3
396
Normal
-0.3
187
Tumor
-0.3
663
Tumor
-0.3
446
Normal
-0.3
628
Normal
-0.3
413
Tumor
-0.3
383
Tumor
-0.3
297
Tumor
-0.3
375
Tumor
-0.3
563
Tumor
-0.3
447
Tumor
-0.3
353
Tumor
-0.3
642
Normal
-0.3
213
Tumor
-0.3
421
Tumor
-0.4
491
Tumor
-0.4
428
Normal
-0.4
188
Normal
-0.4
185
Tumor
-0.4
192
Normal
-0.4
311
Tumor
-0.4
211
Tumor
-0.4
272
Normal
-0.5
661
Tumor
-0.5
487
Tumor
-0.6
141
Tumor
-0.6
1045
Tumor
-0.6
627
Tumor
-0.6
427
Tumor
-0.6
617
Tumor
-1.0
391
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
