MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.8 nTPM
HPA Brain:18.2 nTPM
GTEx:32.8 nTPM
FANTOM5:74.7 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:75.1 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.4
1870 Female, age 42, unknown 21.7
2586 Male, age 75, left hemisphere 19.3
2828 Female, age 72, unknown 17.6
1833 Male, age 53, unknown 17.4
2411 Female, age 72, unknown 16.8
1827 Male, age 72, unknown 16.5
2019 Male, age 18, unknown 15.4
2666 Male, age 74, left hemisphere 14.8
1830 Male, age 51, unknown 14.4
2219 Male, age 76, both hemispheres 10.4
Dorsal raphe nucleus
nTPM: 15.6
2298 Female, age 72, unknown 17.4
1828 Male, age 53, unknown 16.0
2750 Male, age 76, both hemispheres 16.0
2016 Female, age 72, unknown 14.4
2047 Male, age 72, unknown 14.3
Inferior colliculus
nTPM: 15.7
2097 Female, age 72, unknown 18.0
1890 Male, age 53, unknown 16.1
1848 Female, age 42, unknown 15.9
2849 Male, age 72, unknown 12.9
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 14.1
1947 Male, age 18, unknown 16.3
1795 Male, age 51, unknown 13.7
2502 Female, age 75, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 13.6
1831 Male, age 72, unknown 15.6
1840 Male, age 53, unknown 13.7
2850 Male, age 76, both hemispheres 12.6
2464 Female, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 13.8
2053 Male, age 18, unknown 16.1
2140 Male, age 76, both hemispheres 13.5
2272 Male, age 74, both hemispheres 11.7
Pretectal area
nTPM: 15.5
2825 Male, age 18, unknown 17.1
1815 Male, age 53, unknown 16.6
2667 Female, age 75, unknown 16.5
2224 Female, age 72, unknown 16.3
1817 Female, age 42, unknown 16.2
2007 Male, age 72, unknown 15.9
2316 Male, age 76, right hemisphere 15.4
2407 Male, age 75, both hemispheres 14.6
1944 Female, age 72, unknown 14.4
1816 Male, age 51, unknown 13.9
2273 Male, age 74, both hemispheres 13.6
Red nucleus
nTPM: 18.2
1904 Male, age 53, unknown 21.8
1821 Female, age 72, unknown 20.8
2227 Male, age 72, unknown 20.4
1865 Male, age 51, unknown 19.5
1954 Female, age 42, unknown 19.1
2823 Male, age 76, right hemisphere 18.8
2503 Female, age 72, unknown 18.1
2769 Male, age 72, unknown 18.0
2785 Male, age 18, unknown 16.8
2584 Male, age 75, left hemisphere 15.8
2588 Male, age 74, left hemisphere 15.5
2725 Female, age 75, unknown 13.7
Substantia nigra
nTPM: 14.2
2590 Female, age 75, unknown 19.4
1851 Male, age 51, unknown 17.7
2583 Male, age 75, right hemisphere 17.3
1889 Female, age 72, unknown 16.0
1916 Female, age 42, unknown 14.8
2241 Male, age 72, unknown 13.3
2665 Male, age 74, both hemispheres 13.1
2409 Female, age 72, unknown 10.9
1941 Male, age 53, unknown 9.8
2699 Male, age 18, unknown 9.7
Superior colliculus
nTPM: 15.4
1895 Male, age 76, right hemisphere 18.3
2587 Male, age 74, left hemisphere 16.6
2261 Male, age 18, unknown 16.3
1913 Female, age 42, unknown 15.9
1796 Male, age 53, unknown 15.5
1995 Male, age 72, unknown 15.4
2668 Female, age 75, unknown 15.2
1839 Male, age 51, unknown 15.1
2087 Female, age 72, unknown 14.4
2664 Male, age 75, both hemispheres 11.3
Ventral tegmental area
nTPM: 14.6
1915 Female, age 42, unknown 16.1
2410 Female, age 72, unknown 15.2
2218 Male, age 76, both hemispheres 14.6
2223 Female, age 72, unknown 14.4
1942 Male, age 51, unknown 13.7
2021 Male, age 53, unknown 13.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.8
Samples: 139

Max nTPM: 70.6
Min nTPM: 13.4
Std nTPM: 8.8
Median nTPM: 31.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 69.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 60.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 49.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 46.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 45.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 45.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 44.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 44.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 44.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 74.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.7
FF:10158-103A5 76 years, female 74.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.9
Samples: 4

Max nTPM: 55.9
Min nTPM: 32.9
Sample A Female 55.9
Sample B Female 37.6
Sample C Male 41.3
Sample D Male 32.9
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 50.1
Min nTPM: 37.0
Sample A Female 50.1
Sample B Female 40.2
Sample C Male 37.0
Sample D Male 42.6
Periaqueductal gray
nTPM: 41.1
Samples: 3

Max nTPM: 43.9
Min nTPM: 36.7
Sample B Female 36.7
Sample C Male 43.9
Sample D Male 42.7
Superior colliculi
nTPM: 44.5
Samples: 4

Max nTPM: 54.2
Min nTPM: 38.0
Sample A Female 54.2
Sample B Female 44.5
Sample C Male 38.0
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 75.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.2
Samples: 4

Max nTPM: 79.3
Min nTPM: 69.2
Sample A Male 78.4
Sample B Male 73.7
Sample C Female 69.2
Sample D Female 79.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70539157 Antisense, RP_050324_01_A04, Mouse strain C57BL/6J (56 days, male) 1.8

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